Abstract: Southern elephant seals (Mirounga leonina) play a pivotal role in the Southern Ocean as wide-ranging marine predators and major prey consumers within Southern Ocean marine ecosystems. Due to their circumpolar distribution and the remoteness of their habitat, large uncertainties remain about their total population sizes. This is especially true for elephant seal populations in the French Southern Territories in the southern Indian Ocean (i.e. Crozet and Kerguelen Archipelagos) as many breeding sites are inaccessible for ground censuses. Here, we present a simple and efficient approach for estimating the total elephant seal populations of the Kerguelen and Crozet Archipelagos by using very high-resolution satellite imagery (<1m resolution). Twenty-eight satellite images taken during the breeding season to count female elephant seals in inaccessible areas were used and complemented the traditional annual ground counts in accessible areas. For Kerguelen Island sectors likely to host colonies and where no satellite images were available for the breeding season, a statistical predictive model was built to estimate the most likely number of breeding females to be present on a given beach according to its physiographic characteristics. Our results show the reliability of using very high-resolution satellite images, a relatively low-cost platform, to count pinniped populations and provide the first estimation of the total southern elephant seal population for both the Kerguelen 347,995 (s e = 4,950) and Crozet 13,065 (s e = 169) Archipelagos. The combined total represents over 35% of the global elephant seal population with the Kerguelen stock being numerically equivalent to the South Georgia stock. In addition, we re-examined the population trends since the last mid-century for Kerguelen and over the last five decades for Crozet. The demographic trends of the southern Indian Ocean populations show marked growth over the last decade (5.1% and 1.6% annual growth rate for Crozet and Kerguelen respectively), particularly on Crozet where the elephant seal population has more than tripled.

Abstract: The ability of marine mammals to accumulate sufficient lipid energy reserves is vital for mammals' survival and successful reproduction. However, long-term monitoring of at-sea changes in body condition, specifically lipid stores, has only been possible in elephant seals performing prolonged drift dives (low-density lipids alter the rates of depth change while drifting). This approach has limited applicability to other species. Using hydrodynamic performance analysis during transit glides, we developed and validated a novel satellite-linked data logger that calculates real-time changes in body density (∝lipid stores). As gliding is ubiquitous amongst divers, the system can assess body condition in a broad array of diving animals. The tag processes high sampling rate depth and three-axis acceleration data to identify 5 s high pitch angle glide segments at depths >100 m. Body density is estimated for each glide using gliding speed and pitch to quantify drag versus buoyancy forces acting on the gliding animal. We used tag data from 24 elephant seals (Mirounga spp.) to validate the onboard calculation of body density relative to drift rate. The new tags relayed body density estimates over 200 days and documented lipid store accumulation during migration with good correspondence between changes in body density and drift rate. Our study provided updated drag coefficient values for gliding (Cd,f = 0.03) and drifting (Cd,s = 0.12) elephant seals, both substantially lower than previous estimates. We also demonstrated post-hoc estimation of the gliding drag coefficient and body density using transmitted data, which is especially useful when drag parameters cannot be estimated with sufficient accuracy before tag deployment. Our method has the potential to advance the field of marine biology by switching the research paradigm from indirectly inferring animal body condition from foraging effort to directly measuring changes in body condition relative to foraging effort, habitat, ecological factors and anthropogenic stressors in the changing oceans. Expanding the method to account for diving air volumes will expand the system's applicability to shallower-diving (<100 m) species, facilitating real-time monitoring of body condition in a broad range of breath-hold divers.

Abstract: In a context of global warming and sea level rise acceleration, it is key to estimate the evolution of the atmospheric hydrological cycle and temperature in polar regions, which directly influence the surface mass balance of the Arctic and Antarctic ice sheets. Direct observations are available from satellite data for the last 40 years and a few weather data since the 1950s in Antarctica. One of the best ways to access longer records is to use climate proxies in firn or ice cores. The water isotopic composition in these cores is widely used to reconstruct past temperature variations. We need to progress in our understanding of the influence of the atmospheric hydrological cycle on the water isotopic composition of ice cores. First, we present a 2-year-long time series of vapor and precipitation isotopic composition measurement at Dumont d’Urville Station, in Adélie Land. We characterize diurnal variations of meteorological parameters (temperature, atmospheric water mixing ratio (hereafter humidity) and δ18O) for the different seasons and determine the evolution of key relationships (δ18O versus temperature or humidity) throughout the year: we find that the temperature vs. δ18O relationship is dependent on synoptic events dynamics in winter contrary to summer. Then, this data set is used to evaluate the atmospheric general circulation model ECHAM6-wiso (model version with embedded water stable isotopes) in a coastal region of Adélie Land where local conditions are controlled by strong katabatic winds which directly impact the isotopic signal. We show that a combination of continental (79 %) and oceanic (21 %) grid cells leads model outputs (temperature, humidity and δ18O) to nicely fit the observations, at different timescales (i.e., seasonal to synoptic). Therefore we demonstrate the added value of long-term water vapor isotopic composition records for model evaluation. Then, as a clear link is found between the isotopic composition of water vapor and precipitation, we assess how isotopic models can help interpret short firn cores. In fact, a virtual firn core built from ECHAM-wiso outputs explains much more of the variability observed in S1C1 isotopic record than a virtual firn core built from temperature only. Yet, deposition and post-deposition effects strongly affect the firn isotopic signal and probably account for most of the remaining misfits between archived firn signal and virtual firn core based on atmospheric modeling.

Abstract: Our understanding of how microbiome signatures are modulated in wild fish populations remains poorly developed and has, until now, mostly been inferred from studies in commercial and farmed fish populations. Here, for the first time, we have studied changes in the skin and blood microbiomes of the Salmo trutta population of the volcanic Kerguelen archipelago located at the northern limit of the Antarctic Ocean. The Kerguelen Islands present a natural framework of population expansion and reveal a likely situation representing further climate change in distribution areas. Our results showed that S. trutta of the Kerguelen Islands has a microbiome signature distinct from those of salmonids of the Northern Hemisphere. Our study also revealed that the skin and blood microbiomes differ between sedentary and migratory S. trutta. While 18 phyla were shared between both groups of trout, independent of the compartment, 6 phyla were unique to migratory trout. Further analyses showed that microbiome signatures undergo significant site-specific variations that correlate, in some cases, with the peculiarity of specific ecosystems. Our study also revealed the presence of potential pathogens at particular sites and the impact of abiotic factors on the microbiome, most notably due to the volcanic nature of the environment. This study contributes to a better understanding of the factors that modulate the microbiome signatures of migratory and sedentary fish populations. It will also help to better monitor the impacts of climate change on the colonization process in the sub-Antarctic region.