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Author |
David Grémillet, Damien Chevallier, Christophe Guinet |
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Title |
Big data approaches to the spatial ecology and conservation of marine megafauna |
Type |
Journal |
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Year |
2022 |
Publication |
ICES Journal of Marine Science |
Abbreviated Journal |
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Volume  |
79 |
Issue |
4 |
Pages |
975-986 |
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Keywords |
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Abstract |
Satellite remote-sensing and wildlife tracking allow researchers to record rapidly increasing volumes of information on the spatial ecology of marine megafauna in the context of global change. This field of investigation is thereby entering the realm of big data science: Information technology allows the design of completely new frameworks for acquiring, storing, sharing, analysing, visualizing, and publicizing data. This review aims at framing the importance of big data for the conservation of marine megafauna, through intimate knowledge of the spatial ecology of these threatened, charismatic animals. We first define marine megafauna and big data science, before detailing the technological breakthroughs leading to pioneering “big data” studies. We then describe the workflow from acquiring megafauna tracking data to the identification and the prediction of their critical habitats under global changes, leading to marine spatial planning and political negotiations. Finally, we outline future objectives for big data studies, which should not take the form of a blind technological race forward, but of a coordinated, worldwide approach to megafauna spatial ecology, based on regular gap analyses, with care for ethical and environmental implications. Employing big data science for the efficient conservation of marine megafauna will also require inventing new pathways from research to action. |
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Programme |
109,388,1201 |
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Bachelor's thesis |
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Edition |
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ISSN |
1054-3139 |
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Approved |
yes |
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Call Number |
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Serial |
8332 |
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Author |
C. A. Bost, K. Delord, Y. Cherel, C. M. Miskelly, A. Carravieri, P. Bustamante, J. P. Y. Arnould, A. Fromant |
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Title |
Foraging trips and isotopic niche of chick-rearing South Georgian diving petrels from the Kerguelen Islands |
Type |
Journal |
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Year |
2022 |
Publication |
Marine Ecology Progress Series |
Abbreviated Journal |
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Volume |
689 |
Issue |
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Pages |
169-177 |
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Keywords |
At-sea distribution Pelecanoides georgicus Procellariiformes Southern Ocean Trophic niche |
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Abstract |
Seabirds are central place foragers, relying on prey that is patchily distributed and of variable predictability. Species travelling at a high energetic cost are more strongly dependent on spatially predictable prey. This is the case for diving petrels Pelecanoides spp., which are small Procellariiformes that feed by pursuit diving and travel by flapping constantly. Despite their abundance and importance as zooplankton consumers, information on the foraging strategy of diving petrels is still lacking. The detailed at-sea movements and the trophic niche of the South Georgian diving petrel P. georgicus was investigated for the first time using miniaturized GPS and the stable isotope method, respectively. Overall, South Georgian diving petrels from the Kerguelen Islands performed unexpected, direct and long-distance trips (mean foraging range: 191-217 km) to the Antarctic Polar Front, south of the archipelago. This foraging ground is a productive and predictable area, where the birds stopped and fed at the distal part of their trip. Blood isotopic values indicate that the tracked birds fed consistently on macrozooplankton. Such a distant oceanic feeding strategy contrasts with the coastal foraging patterns of the closely related common diving petrel P. urinatrix. Commuting to a more distant but easily accessible resource allows South Georgian diving petrels to cope with their high commuting costs, and to segregate spatially from the sympatric common diving petrel during the breeding season. |
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Programme |
109,394 |
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Thesis |
Bachelor's thesis |
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Edition |
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ISSN |
0171-8630, 1616-1599 |
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yes |
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Call Number |
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Serial |
8364 |
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Author |
Olivier Chastel, Jérôme Fort, Joshua T. Ackerman, Céline Albert, Frédéric Angelier, Niladri Basu, Pierre Blévin, Maud Brault-Favrou, Jan Ove Bustnes, Paco Bustamante, Jóhannis Danielsen, Sébastien Descamps, Rune Dietz, Kjell Einar Erikstad, Igor Eulaers, Alexey Ezhov, Abram B. Fleishman, Geir W. Gabrielsen, Maria Gavrilo, Grant Gilchrist, Olivier Gilg, Sindri Gíslason, Elena Golubova, Aurélie Goutte, David Grémillet, Gunnar T. Hallgrimsson, Erpur S. Hansen, Sveinn Are Hanssen, Scott Hatch, Nicholas P. Huffeldt, Dariusz Jakubas, Jón Einar Jónsson, Alexander S. Kitaysky, Yann Kolbeinsson, Yuri Krasnov, Robert J. Letcher, Jannie F. Linnebjerg, Mark Mallory, Flemming Ravn Merkel, Børge Moe, William J. Montevecchi, Anders Mosbech, Bergur Olsen, Rachael A. Orben, Jennifer F. Provencher, Sunna B. Ragnarsdottir, Tone K. Reiertsen, Nora Rojek, Marc Romano, Jens Søndergaard, Hallvard Strøm, Akinori Takahashi, Sabrina Tartu, Thorkell L. Thórarinsson, Jean-Baptiste Thiebot, Alexis P. Will, Simon Wilson, Katarzyna Wojczulanis-Jakubas, Glenn Yannic |
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Title |
Mercury contamination and potential health risks to Arctic seabirds and shorebirds |
Type |
Journal |
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Year |
2022 |
Publication |
Science of The Total Environment |
Abbreviated Journal |
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Volume |
844 |
Issue |
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Pages |
156944 |
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Keywords |
Arctic Birds Mercury Toxicity benchmarks Toxicological effects |
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Abstract |
Since the last Arctic Monitoring and Assessment Programme (AMAP) effort to review biological effects of mercury (Hg) on Arctic biota in 2011 and 2018, there has been a considerable number of new Arctic bird studies. This review article provides contemporary Hg exposure and potential health risk for 36 Arctic seabird and shorebird species, representing a larger portion of the Arctic than during previous AMAP assessments now also including parts of the Russian Arctic. To assess risk to birds, we used Hg toxicity benchmarks established for blood and converted to egg, liver, and feather tissues. Several Arctic seabird populations showed Hg concentrations that exceeded toxicity benchmarks, with 50 % of individual birds exceeding the “no adverse health effect” level. In particular, 5 % of all studied birds were considered to be at moderate or higher risk to Hg toxicity. However, most seabirds (95 %) were generally at lower risk to Hg toxicity. The highest Hg contamination was observed in seabirds breeding in the western Atlantic and Pacific Oceans. Most Arctic shorebirds exhibited low Hg concentrations, with approximately 45 % of individuals categorized at no risk, 2.5 % at high risk category, and no individual at severe risk. Although the majority Arctic-breeding seabirds and shorebirds appeared at lower risk to Hg toxicity, recent studies have reported deleterious effects of Hg on some pituitary hormones, genotoxicity, and reproductive performance. Adult survival appeared unaffected by Hg exposure, although long-term banding studies incorporating Hg are still limited. Although Hg contamination across the Arctic is considered low for most bird species, Hg in combination with other stressors, including other contaminants, diseases, parasites, and climate change, may still cause adverse effects. Future investigations on the global impact of Hg on Arctic birds should be conducted within a multi-stressor framework. This information helps to address Article 22 (Effectiveness Evaluation) of the Minamata Convention on Mercury as a global pollutant. |
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Programme |
330,388,1036,1210 |
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Bachelor's thesis |
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Place of Publication |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0048-9697 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
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Approved |
yes |
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Call Number |
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Serial |
8388 |
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| Permanent link to this record |
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Author |
Alice Carravieri, Orsolya Vincze, Paco Bustamante, Joshua T. Ackerman, Evan M. Adams, Frédéric Angelier, Olivier Chastel, Yves Cherel, Olivier Gilg, Elena Golubova, Alexander Kitaysky, Katelyn Luff, Chad L. Seewagen, Hallvard Strøm, Alexis P. Will, Glenn Yannic, Mathieu Giraudeau, Jérôme Fort |
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Title |
Quantitative meta-analysis reveals no association between mercury contamination and body condition in birds |
Type |
Journal |
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Year |
2022 |
Publication |
Biological Reviews |
Abbreviated Journal |
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Volume |
97 |
Issue |
4 |
Pages |
1253-1271 |
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Keywords |
blood body mass energetics fat feather feeding habitat metabolism species |
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Abstract |
Mercury contamination is a major threat to the global environment, and is still increasing in some regions despite international regulations. The methylated form of mercury is hazardous to biota, yet its sublethal effects are difficult to detect in wildlife. Body condition can vary in response to stressors, but previous studies have shown mixed effects of mercury on body condition in wildlife. Using birds as study organisms, we provide the first quantitative synthesis of the effect of mercury on body condition in animals. In addition, we explored the influence of intrinsic, extrinsic and methodological factors potentially explaining cross-study heterogeneity in results. We considered experimental and correlative studies carried out in adult birds and chicks, and mercury exposure inferred from blood and feathers. Most experimental investigations (90%) showed a significant relationship between mercury concentrations and body condition. Experimental exposure to mercury disrupted nutrient (fat) metabolism, metabolic rates, and food intake, resulting in either positive or negative associations with body condition. Correlative studies also showed either positive or negative associations, of which only 14% were statistically significant. Therefore, the overall effect of mercury concentrations on body condition was null in both experimental (estimate ± SE = 0.262 ± 0.309, 20 effect sizes, five species) and correlative studies (−0.011 ± 0.020, 315 effect sizes, 145 species). The single and interactive effects of age class and tissue type were accounted for in meta-analytic models of the correlative data set, since chicks and adults, as well as blood and feathers, are known to behave differently in terms of mercury accumulation and health effects. Of the 15 moderators tested, only wintering status explained cross-study heterogeneity in the correlative data set: free-ranging wintering birds were more likely to show a negative association between mercury and body condition. However, wintering effect sizes were limited to passerines, further studies should thus confirm this trend in other taxa. Collectively, our results suggest that (i) effects of mercury on body condition are weak and mostly detectable under controlled conditions, and (ii) body condition indices are unreliable indicators of mercury sublethal effects in the wild. Food availability, feeding rates and other sources of variation that are challenging to quantify likely confound the association between mercury and body condition in natura. Future studies could explore the metabolic effects of mercury further using designs that allow for the estimation and/or manipulation of food intake in both wild and captive birds, especially in under-represented life-history stages such as migration and overwintering. |
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Programme |
109,330,388,1036,1210 |
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Thesis |
Bachelor's thesis |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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ISSN |
1469-185X |
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Area |
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Expedition |
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Conference |
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Notes |
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Approved |
yes |
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Call Number |
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Serial |
8400 |
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| Permanent link to this record |
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Author |
Hassen Allegue, Christophe Guinet, Samantha C. Patrick, Mark A. Hindell, Clive R. McMahon, Denis Réale |
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Title |
Sex, body size, and boldness shape the seasonal foraging habitat selection in southern elephant seals |
Type |
Journal |
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Year |
2022 |
Publication |
Ecology and Evolution |
Abbreviated Journal |
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Volume |
12 |
Issue |
1 |
Pages |
e8457 |
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Keywords |
benefit–cost trade-off biologging habitat selection Mirounga leonina personality |
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Abstract |
Selecting foraging habitat is a fundamental behavior in the life of organisms as it directly links resource acquisition to fitness. Differences in habitat selection among individuals may arise from several intrinsic and extrinsic factors, and yet, their interaction has been given little attention in the study of wild populations. We combine sex, body size, and boldness to explain individual differences in the seasonal foraging habitat selection of southern elephant seals (Mirounga leonina) from the Kerguelen Archipelago. We hypothesize that habitat selection is linked to the trade-off between resource acquisition and risk, and that individuals differ in their position along this trade-off because of differences in reproductive strategies, life stages, and metabolic requirements. Before the post-molt foraging trip, we used a novel object approach test to quantify the boldness of 28 subadult and adult females and 42 subadult males and equipped them with data loggers to track their movements at sea. Subadult males selected neritic and oceanic habitats, whereas females mostly selected less productive oceanic habitats. Both sexes showed a seasonal shift from Antarctic habitats in the south in the summer to the free of ice subantarctic and subtropical habitats in the north in the winter. Males avoided oceanic habitats and selected more productive neritic and Antarctic habitats with body size mostly in the winter. Bolder males selected northern warmer waters in winter, while shyer ones selected the Kerguelen plateau and southern colder oceanic waters. Bolder females selected the Kerguelen plateau in the summer when prey profitability is assumed to be the highest. This study not only provides new insights into the spatiotemporal foraging ecology of elephant seals in relation to personality but also emphasizes the relevance of combining several intrinsic and extrinsic factors in understanding among-individual variation in space use essential in wildlife management and conservation. |
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Programme |
109,1201 |
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Corporate Author |
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Thesis |
Bachelor's thesis |
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Place of Publication |
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Series Title |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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ISSN |
2045-7758 |
ISBN |
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Expedition |
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Notes |
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Approved |
yes |
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Call Number |
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Serial |
8405 |
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| Permanent link to this record |
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Author |
Adam D. Morris, Simon J. Wilson, Rob J. Fryer, Philippe J. Thomas, Karista Hudelson, Birgitta Andreasen, Pierre Blévin, Paco Bustamante, Olivier Chastel, Guttorm Christensen, Rune Dietz, Marlene Evans, Anita Evenset, Steven H. Ferguson, Jérôme Fort, Mary Gamberg, David Grémillet, Magali Houde, Robert J. Letcher, Lisa Loseto, Derek Muir, Marianna Pinzone, Amanda Poste, Heli Routti, Christian Sonne, Gary Stern, Frank F. Rigét |
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Title |
Temporal trends of mercury in Arctic biota: 10 more years of progress in Arctic monitoring |
Type |
Journal |
| |
Year |
2022 |
Publication |
Science of The Total Environment |
Abbreviated Journal |
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Volume |
839 |
Issue |
|
Pages |
155803 |
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Keywords |
Arctic Biota Environmental monitoring Mercury Statistical assessment Temporal trends |
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Abstract |
Temporal trend analysis of (total) mercury (THg) concentrations in Arctic biota were assessed as part of the 2021 Arctic Monitoring and Assessment Programme (AMAP) Mercury Assessment. A mixed model including an evaluation of non-linear trends was applied to 110 time series of THg concentrations from Arctic and Subarctic biota. Temporal trends were calculated for full time series (6–46 years) and evaluated with a particular focus on recent trends over the last 20 years. Three policy-relevant questions were addressed: (1) What time series for THg concentrations in Arctic biota are currently available? (2) Are THg concentrations changing over time in biota from the Arctic? (3) Are there spatial patterns in THg trends in biota from the Arctic? Few geographical patterns of recent trends in THg concentrations were observed; however, those in marine mammals tended to be increasing at more easterly longitudes, and those of seabirds tended to be increasing in the Northeast Atlantic; these should be interpreted with caution as geographic coverage remains variable. Trends of THg in freshwater fish were equally increasing and decreasing or non-significant while those in marine fish and mussels were non-significant or increasing. The statistical power to detect trends was greatly improved compared to the 2011 AMAP Mercury Assessment; 70% of the time series could detect a 5% annual change at the 5% significance level with power ≥ 80%, while in 2011 only 19% met these criteria. Extending existing time series, and availability of new, powerful time series contributed to these improvements, highlighting the need for annual monitoring, particularly given the spatial and temporal information needed to support initiatives such as the Minamata Convention on Mercury. Collecting the same species/tissues across different locations is recommended. Extended time series from Alaska and new data from Russia are also needed to better establish circumarctic patterns of temporal trends. |
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Programme |
330,388 |
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Corporate Author |
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Thesis |
Bachelor's thesis |
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Place of Publication |
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Series Issue |
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Edition |
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ISSN |
0048-9697 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
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Approved |
yes |
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Call Number |
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Serial |
8422 |
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| Permanent link to this record |
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Author |
G. Picard, H. Löwe, F. Domine, L. Arnaud, F. Larue, V. Favier, E. Le Meur, E. Lefebvre, J. Savarino, A. Royer |
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Title |
The Microwave Snow Grain Size: A New Concept to Predict Satellite Observations Over Snow-Covered Regions |
Type |
Journal |
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Year |
2022 |
Publication |
AGU Advances |
Abbreviated Journal |
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Volume |
3 |
Issue |
4 |
Pages |
e2021AV000630 |
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Keywords |
microstructure microwave modeling porous media remote sensing snow |
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Abstract |
Satellite observations of snow-covered regions in the microwave range have the potential to retrieve essential climate variables such as snow height. This requires a precise understanding of how microwave scattering is linked to snow microstructural properties (density, grain size, grain shape and arrangement). This link has so far relied on empirical adjustments of the theories, precluding the development of robust retrieval algorithms. Here we solve this problem by introducing a new microstructural parameter able to consistently predict scattering. This “microwave grain size” is demonstrated to be proportional to the measurable optical grain size and to a new factor describing the chord length dispersion in the microstructure, a geometrical property known as polydispersity. By assuming that the polydispersity depends on the snow grain type only, we retrieve its value for rounded and faceted grains by optimization of microwave satellite observations in 18 Antarctic sites, and for depth hoar in 86 Canadian sites using ground-based observations. The value for the convex grains (0.6) compares favorably to the polydispersity calculated from 3D micro-computed tomography images for alpine grains, while values for depth hoar show wider variations (1.2–1.9) and are larger in Canada than in the Alps. Nevertheless, using one value for each grain type, the microwave observations in Antarctica and in Canada can be simulated from in-situ measurements with good accuracy with a fully physical model. These findings improve snow scattering modeling, enabling future more accurate uses of satellite observations in snow hydrological and meteorological applications. |
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Programme |
1110,1177 |
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Thesis |
Bachelor's thesis |
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Place of Publication |
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Summary Language |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
2576-604X |
ISBN |
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Medium |
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Area |
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Notes |
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Approved |
yes |
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Call Number |
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Serial |
8424 |
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| Permanent link to this record |
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Author |
D. Noll, F. Leon, D. Brandt, P. Pistorius, C. Le Bohec, F. Bonadonna, P. N. Trathan, A. Barbosa, A. Raya Rey, G. P. M. Dantas, R. C. K. Bowie, E. Poulin, J. A. Vianna |
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Title |
Positive selection over the mitochondrial genome and its role in the diversification of gentoo penguins in response to adaptation in isolation |
Type |
Journal |
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Year |
2022 |
Publication |
Scientific Reports |
Abbreviated Journal |
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Volume |
12 |
Issue |
1 |
Pages |
3767 |
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Keywords |
Evolution Evolutionary genetics |
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Abstract |
Although mitochondrial DNA has been widely used in phylogeography, evidence has emerged that factors such as climate, food availability, and environmental pressures that produce high levels of stress can exert a strong influence on mitochondrial genomes, to the point of promoting the persistence of certain genotypes in order to compensate for the metabolic requirements of the local environment. As recently discovered, the gentoo penguins (Pygoscelis papua) comprise four highly divergent lineages across their distribution spanning the Antarctic and sub-Antarctic regions. Gentoo penguins therefore represent a suitable animal model to study adaptive processes across divergent environments. Based on 62 mitogenomes that we obtained from nine locations spanning all four gentoo penguin lineages, we demonstrated lineage-specific nucleotide substitutions for various genes, but only lineage-specific amino acid replacements for the ND1 and ND5 protein-coding genes. Purifying selection (dN/dS < 1) is the main driving force in the protein-coding genes that shape the diversity of mitogenomes in gentoo penguins. Positive selection (dN/dS > 1) was mostly present in codons of the Complex I (NADH genes), supported by two different codon-based methods at the ND1 and ND4 in the most divergent lineages, the eastern gentoo penguin from Crozet and Marion Islands and the southern gentoo penguin from Antarctica respectively. Additionally, ND5 and ATP6 were under selection in the branches of the phylogeny involving all gentoo penguins except the eastern lineage. Our study suggests that local adaptation of gentoo penguins has emerged as a response to environmental variability promoting the fixation of mitochondrial haplotypes in a non-random manner. Mitogenome adaptation is thus likely to have been associated with gentoo penguin diversification across the Southern Ocean and to have promoted their survival in extreme environments such as Antarctica. Such selective processes on the mitochondrial genome may also be responsible for the discordance detected between nuclear- and mitochondrial-based phylogenies of gentoo penguin lineages. |
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Programme |
137,354 |
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Thesis |
Bachelor's thesis |
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Series Issue |
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Edition |
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ISSN |
2045-2322 |
ISBN |
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Notes |
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Approved |
yes |
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Call Number |
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Serial |
8457 |
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| Permanent link to this record |
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Author |
Fernando Arce, Mark A. Hindell, Clive R. McMahon, Simon J. Wotherspoon, Christophe Guinet, Robert G. Harcourt, Sophie Bestley |
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Title |
Elephant seal foraging success is enhanced in Antarctic coastal polynyas |
Type |
Journal |
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Year |
2022 |
Publication |
Proceedings of the Royal Society B: Biological Sciences |
Abbreviated Journal |
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Volume |
289 |
Issue |
1967 |
Pages |
20212452 |
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Keywords |
body condition drift rates foraging behaviour Mirounga leonina post-polynyas Southern Ocean |
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Abstract |
Antarctic polynyas are persistent open water areas which enable early and large seasonal phytoplankton blooms. This high primary productivity, boosted by iron supply from coastal glaciers, attracts organisms from all trophic levels to form a rich and diverse community. How the ecological benefit of polynya productivity is translated to the highest trophic levels remains poorly resolved. We studied 119 southern elephant seals feeding over the Antarctic shelf and demonstrated that: (i) 96% of seals foraging here used polynyas, with individuals spending on average 62% of their time there; (ii) the seals exhibited more area-restricted search behaviour when in polynyas; and (iii) these seals gained more energy (indicated by increased buoyancy from greater fat stores) when inside polynyas. This higher-quality foraging existed even when ice was not present in the study area, indicating that these are important and predictable foraging grounds year-round. Despite these energetic advantages from using polynyas, not all the seals used them extensively. Factors other than food supply may influence an individual's choice in their use of feeding grounds, such as exposure to predation or the probability of being able to return to distant sub-Antarctic breeding sites. |
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7983 |
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Author |
Mark Andrew Hindell, Clive Reginald McMahon, Christophe Guinet, Rob Harcourt, Ian David Jonsen, Ben Raymond, Dale Maschette |
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Title |
Assessing the potential for resource competition between the Kerguelen Plateau fisheries and southern elephant seals |
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2022 |
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Frontiers in Marine Science |
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9 |
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Indirect ecological interactions such as competition for resources between fisheries and marine predators have often been proposed but can be difficult to demonstrate empirically. The Kerguelen Plateau in the Southern Indian Ocean supports fisheries for both Patagonian toothfish and mackerel icefish and is also an important foraging ground for several avian and mammalian predators, including the southern elephant seal. We quantified the spatio-temporal use of the plateau by southern elephant seals and found that males and females spent 30% of their time on the plateau within the commonly used fishing grounds, indicating the possibility of competition for resources there. We then contrasted the seals’ use of two habitat types, the benthos (where interactions with the long-line fisheries are most likely) and the epi-pelagic zone. The likelihood of feeding on the benthos declined as ocean depth increased and was also less likely at night. Males were also more likely to feed on the benthos than females. The sub-adult male seals consumed an estimated 6,814 – 14,848 tons of high energy content prey (including toothfish) and females 7,085 – 18,037 tons from the plateau during the post-molt winter months. For males this represented 79.6 – 173.4% of the mean annual catch by the Kerguelen fishery compared to 82.8 – 210.7% for adult females. When considering the seals consumption of fish from the benthos within the fishing grounds these estimates decreased to 3.6 – 15.1% of the fishery’s total annual catch for females and 7.8 – 19.1% for males. While this further indicates the possibility of indirect ecological interactions (with the fishery taking more fish than the seals), the lack of detailed diet information for the seals precludes us from establishing the degree or nature of the possible interactions because the importance of toothfish and icefish in the diet of the seals is unknown. However, the unique life history and highly polygynous nature of this species, and the lack of evidence of a measurable effect on either the seal’s population growth rates or the catch per unit of the fishery, suggest that any indirect ecological interactions are not of sufficient magnitude to affect either the seal population or the fishery. |
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109,1201 |
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Bachelor's thesis |
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2296-7745 |
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yes |
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8561 |
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