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Christopher Burot, Rémi Amiraux, Patricia Bonin, Sophie Guasco, Marcel Babin, Fabien Joux, Dominique Marie, Laure Vilgrain, Hermann J. Heipieper, Jean-François Rontani |
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Title |
Viability and stress state of bacteria associated with primary production or zooplankton-derived suspended particulate matter in summer along a transect in Baffin Bay (Arctic Ocean) |
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2021 |
Publication |
Science of The Total Environment |
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770 |
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145252 |
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Bacterial viability EPS isomerase Micro- and macro-zooplankton Salinity stress Sea ice algae |
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Abstract |
In the framework of the GreenEdge Project (whose the general objective is to understand the dynamic of the phytoplankton spring bloom in Arctic Ocean), lipid composition and viability and stress state of bacteria were monitored in sea ice and suspended particulate matter (SPM) samples collected in 2016 along a transect from sea ice to open water in Baffin Bay (Arctic Ocean). Lipid analyses confirmed the dominance of diatoms in the bottommost layer of ice and suggested (i) the presence of a strong proportion of micro-zooplankton in SPM samples collected at the western ice covered St 403 and St 409 and (ii) a high proportion of macro-zooplankton (copepods) in SPM samples collected at the eastern ice covered St 413 and open water St 418. The use of the propidium monoazide (PMA) method allowed to show a high bacterial mortality in sea ice and in SPM material collected in shallower waters at St 409 and St 418. This mortality was attributed to the release of bactericidal free fatty acids by sympagic diatoms under the effect of light stress. A strong cis-trans isomerization of bacterial MUFAs was observed in the deeper SPM samples collected at the St 403 and St 409. It was attributed to the ingestion of bacteria stressed by salinity in brine channels of ice by sympagic bacterivorous microzooplankton (ciliates) incorporating trans fatty acids of their preys before to be released in the water column during melting. The high trans/cis ratios also observed in SPM samples collected in the shallower waters at St 413 and St 418 suggest the presence of positively or neutrally buoyant extracellular polymeric substances (EPS)-rich particles retained in sea ice and discharged (with bacteria stressed by salinity) in seawater after the initial release of algal biomass. Such EPS particles, which are generally considered as ideal vectors for bacterial horizontal distribution in the Arctic, appeared to contain a high proportion of dead and non-growing bacteria. |
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1164 |
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0048-9697 |
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yes |
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8253 |
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Clive R. McMahon, Fabien Roquet, Sophie Baudel, Mathieu Belbeoch, Sophie Bestley, Clint Blight, Lars Boehme, Fiona Carse, Daniel P. Costa, Michael A. Fedak, Christophe Guinet, Robert Harcourt, Emma Heslop, Mark A. Hindell, Xavier Hoenner, Kim Holland, Mellinda Holland, Fabrice R. A. Jaine, Tiphaine Jeanniard du Dot, Ian Jonsen, Theresa R. Keates, Kit M. Kovacs, Sara Labrousse, Philip Lovell, Christian Lydersen, David March, Matthew Mazloff, Megan K. McKinzie, Mônica M. C. Muelbert, Kevin O’Brien, Lachlan Phillips, Esther Portela, Jonathan Pye, Stephen Rintoul, Katsufumi Sato, Ana M. M. Sequeira, Samantha E. Simmons, Vardis M. Tsontos, Victor Turpin, Esmee van Wijk, Danny Vo, Mia Wege, Frederick Gilbert Whoriskey, Kenady Wilson, Bill Woodward |
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Title |
Animal Borne Ocean Sensors – AniBOS – An Essential Component of the Global Ocean Observing System |
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Year |
2021 |
Publication |
Frontiers in Marine Science |
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Volume |
8 |
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Marine animals equipped with biological and physical electronic sensors have produced long-term data streams on key marine environmental variables, hydrography, animal behavior and ecology. These data are an essential component of the Global Ocean Observing System (GOOS). The Animal Borne Ocean Sensors (AniBOS) network aims to coordinate the long-term collection and delivery of marine data streams, providing a complementary capability to other GOOS networks that monitor Essential Ocean Variables (EOVs), essential climate variables (ECVs) and essential biodiversity variables (EBVs). AniBOS augments observations of temperature and salinity within the upper ocean, in areas that are under-sampled, providing information that is urgently needed for an improved understanding of climate and ocean variability and for forecasting. Additionally, measurements of chlorophyll fluorescence and dissolved oxygen concentrations are emerging. The observations AniBOS provides are used widely across the research, modeling and operational oceanographic communities. High latitude, shallow coastal shelves and tropical seas have historically been sampled poorly with traditional observing platforms for many reasons including sea ice presence, limited satellite coverage and logistical costs. Animal-borne sensors are helping to fill that gap by collecting and transmitting in near real time an average of 500 temperature-salinity-depth profiles per animal annually and, when instruments are recovered (∼30% of instruments deployed annually, n = 103 ± 34), up to 1,000 profiles per month in these regions. Increased observations from under-sampled regions greatly improve the accuracy and confidence in estimates of ocean state and improve studies of climate variability by delivering data that refine climate prediction estimates at regional and global scales. The GOOS Observations Coordination Group (OCG) reviews, advises on and coordinates activities across the global ocean observing networks to strengthen the effective implementation of the system. AniBOS was formally recognized in 2020 as a GOOS network. This improves our ability to observe the ocean’s structure and animals that live in them more comprehensively, concomitantly improving our understanding of global ocean and climate processes for societal benefit consistent with the UN Sustainability Goals 13 and 14: Climate and Life below Water. Working within the GOOS OCG framework ensures that AniBOS is an essential component of an integrated Global Ocean Observing System. |
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2296-7745 |
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yes |
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8326 |
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Author |
Crouzet N. |
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Title |
Monitoring warm transiting exoplanets for Ariel with ASTEP+ |
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Communication |
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Year |
2021 |
Publication |
Journée Ariel France, 28 janvier 2021 |
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1066 |
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yes |
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7826 |
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Cyrielle Solis (Based In Lsce, Internship Will Be Supervised Both By Lsce - Amaelle Landais, Françoise Vimeux -, And Ige - Olivier Magand-, Laboratories) |
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Title |
Isotopic signature of atmospheric dynamics on the island of Amsterdam and link to large-scale moisture transport |
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Master 2 |
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Year |
2021 |
Publication |
Internship from man and biosphere master |
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Climate And Water Cycle Reconstruction Over The Last Centuries And Prediction Should Be Improved In The Southern Hemisphere (E.g. Last Ipcc Report). First, Direct Observations Are Scarce (E.g. In Antarctica, Mainly Basic Automatic Weather Station – Aws – Only Since The 50’s And Satellite Observations). As A Consequence, Climate And Water Cycle Reconstructions Are Largely Dependent On Proxy Measurements Such As Water Isotopes In Polar Ice Cores, Even Over The Last Century. Second, Climate And Water Cycle Reconstructions Using Models Should Be Improved. In Particular, Problems Have Been Identified For (1) Estimation Of Precipitation Amounts (Large Discrepancies Among Models Over The Austral Ocean And The Ice-sheet), (2) Description Of Particular Atmospheric Processes Associated With Cloud Microphysics And Exchanges Between Surface And Atmosphere In Polar Regions And (3) Seasonal To Interannual Evolution Of The Locations Of The Westerlies And Subtropical Jet And Associated Air Mass Trajectories. The Last Aspect Has Important Direct Consequences For The Atmospheric Dynamics In This Region But Also Indirect Consequences Such As The Links Between Westerlies, Co2 Outgassing And Sea Ice Extent In The Austral Ocean (Saunders Et Al. 2018; Menviel Et Al. 2018; Holland And Kwok, 2012). With The Objectives To Provide (1) A Better Description Of Water Cycle Dynamic In The Southern Ocean At Annual And Interannual Scales And (2) An Improved Transfer Function Between Climate / Water Cycle And Water Isotopes In This Region, A Bunch Of Instruments Measuring Continuously The Isotopic Composition Of Water In The Water Vapor And In The Precipitation Has Been Installed Over The Last Years Along A Transect From La Réunion To Antarctica.first Results From The Antarctic Instruments Reveal Clear Isotopic Signatures Of Large Scale Water Cycle Features Such As Atmospheric Rivers Dominating The Surface Mass Balance In Antarctica. In La Réunion, An Extensive Study Of The Drivers Of The Isotopic Composition Of The Water Vapor Showed That The Influence Of The Subtropical Westerly Jet Dominates The Water Isotopic Signal At Night. To Connect The Two Regions, An Instrument Is Running On Amsterdam Island Since November 2019 With First Results Showing A Clear Isotopic Signature During The High Pressure And Low Pressure Synoptic Events. Still, No In-depth Study Of The Data Trying To Connect The Isotopic Record In Amsterdam Island To Larger Scale Patterns Of The Water Cycle Has Been Initiated.the Goal Of This Internship Is To Provide The First Analyses Of The Isotopic (Water Vapor And Precipitation) Records On Amsterdam Island With A Comparison With Meteorological Data And Environmental Data Collected In Parallel On The Observatory Of Amsterdam Island (E.g. Gaseous Elemental Mercury). After These First Analyses Of The Data, Comparisons Will Be Performed With Water Isotopic Records In La Réunion Over Selected Events (Subtropical Jet Or Cold Fronts Intrusions). This Study Will Involve Analyses Of Meteorological Maps As Well As Backtrajectories.this Internship Requires Skills For (Python Or R Languages) And Involves Large Interactions Within A Large Research Team. |
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1028 |
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8056 |
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Author |
Cyril Audrouin |
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Title |
Croissance musculaire chez le poussin de manchot royal (Aptenodytes patagonicus), liens avec la saisonnalité et la condition corporelle. |
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Master 2 |
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Year |
2021 |
Publication |
IPHC – DEPE Strasbourg |
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119 |
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yes |
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8102 |
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Damien Ertz, Neil Sanderson, Marc Lebouvier |
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Title |
Thelopsis challenges the generic circumscription in the Gyalectaceae and brings new insights to the taxonomy of Ramonia |
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Year |
2021 |
Publication |
The Lichenologist |
Abbreviated Journal |
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Volume |
53 |
Issue |
1 |
Pages |
45-61 |
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Keywords |
Arthoniales Gyalectales lichen multispory phylogeny |
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Abstract |
The genus Thelopsis was classified in the family Stictidaceae but its systematic position has never been investigated by molecular methods. In order to determine its family placement and to test its monophyly, fungal DNA of recent collections of Thelopsis specimens was sequenced. Phylogenetic analyses using nuLSU, RPB2 and mtSSU sequences reveal that members of Thelopsis form a monophyletic group within the genus Gyalecta as currently accepted. The placement of Thelopsis, including the generic type T. rubella, within the genus Gyalecta challenges the generic circumscription of this group because Thelopsis is well recognized by the combination of morphological characters: perithecioid ascomata, well-developed periphysoids, polysporous asci and small, few-septate ellipsoid-oblong ascospores. The sterile sorediate Opegrapha corticola is also placed in the Gyalectaceae as sister species to Thelopsis byssoidea + T. rubella. Ascomata of O. corticola are illustrated for the first time and support its placement in the genus Thelopsis. The hypothesis that O. corticola might represent the sorediate fertile morph of T. rubella is not confirmed because the species is phylogenetically and morphologically distinct. Thelopsis is recovered as polyphyletic, with T. melathelia being placed as sister species to Ramonia. The new combinations Thelopsis corticola (Coppins & P. James) Sanderson & Ertz comb. nov. and Ramonia melathelia (Nyl.) Ertz comb. nov. are introduced and a new species of Gyalecta, G. amsterdamensis Ertz, is described from Amsterdam and Saint-Paul Islands, characterized by a sterile thallus with discrete soralia. Petractis luetkemuelleri and P. nodispora are accommodated in the new genus Neopetractis, differing from the generic type (P. clausa) by having a different phylogenetic position and a different photobiont. Francisrosea bicolor Ertz & Sanderson gen. & sp. nov. is described for a sterile sorediate lichen somewhat similar to Opegrapha corticola but having an isolated phylogenetic position as sister to a clade including Gyalidea praetermissa and the genera Neopetractis and Ramonia. Gyalecta farlowii, G. nidarosiensis and G. carneola are placed in a molecular phylogeny for the first time. The taxonomic significance of morphological characters in Gyalectaceae is discussed. |
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1167 |
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0024-2829, 1096-1135 |
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yes |
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7078 |
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Daniel C. Jones, Filipe R. Ceia, Eugene Murphy, Karine Delord, Robert W. Furness, Ariane Verdy, Matthew Mazloff, Richard A. Phillips, Paul M. Sagar, Jean-Baptiste Sallée, Ben Schreiber, David R. Thompson, Leigh G. Torres, Philip J. Underwood, Henri Weimerskirch, José C. Xavier |
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Title |
Untangling local and remote influences in two major petrel habitats in the oligotrophic Southern Ocean |
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Year |
2021 |
Publication |
Global Change Biology |
Abbreviated Journal |
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Volume |
27 |
Issue |
22 |
Pages |
5773-5785 |
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Keywords |
Antarctic Circumpolar Current (ACC) biogeography conservation grey petrels high seas hotspot open ocean primary productivity Procellaria cinerea seabirds |
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Abstract |
Ocean circulation connects geographically distinct ecosystems across a wide range of spatial and temporal scales via exchanges of physical and biogeochemical properties. Remote oceanographic processes can be especially important for ecosystems in the Southern Ocean, where the Antarctic Circumpolar Current transports properties across ocean basins through both advection and mixing. Recent tracking studies have indicated the existence of two large-scale, open ocean habitats in the Southern Ocean used by grey petrels (Procellaria cinerea) from two populations (i.e., Kerguelen and Antipodes islands) during their nonbreeding season for extended periods during austral summer (i.e., October to February). In this work, we use a novel combination of large-scale oceanographic observations, surface drifter data, satellite-derived primary productivity, numerical adjoint sensitivity experiments, and output from a biogeochemical state estimate to examine local and remote influences on these grey petrel habitats. Our aim is to understand the oceanographic features that control these isolated foraging areas and to evaluate their ecological value as oligotrophic open ocean habitats. We estimate the minimum local primary productivity required to support these populations to be much <1% of the estimated local primary productivity. The region in the southeast Indian Ocean used by the birds from Kerguelen is connected by circulation to the productive Kerguelen shelf. In contrast, the region in the south-central Pacific Ocean used by seabirds from the Antipodes is relatively isolated suggesting it is more influenced by local factors or the cumulative effects of many seasonal cycles. This work exemplifies the potential use of predator distributions and oceanographic data to highlight areas of the open ocean that may be more dynamic and productive than previously thought. Our results highlight the need to consider advective connections between ecosystems in the Southern Ocean and to re-evaluate the ecological relevance of oligotrophic Southern Ocean regions from a conservation perspective. |
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109 |
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ISSN |
1365-2486 |
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yes |
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8258 |
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Author |
Daniela Levicoy, Sebastián Rosenfeld, Leyla Cárdenas |
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Title |
Divergence time and species delimitation of microbivalves in the Southern Ocean: the case of Kidderia species |
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Year |
2021 |
Publication |
Polar Biology |
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Volume |
44 |
Issue |
7 |
Pages |
1365-1377 |
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The systematics of Subantarctic and Antarctic near-shore marine benthic invertebrates requires major revision and highlights the necessity to incorporate additional sources of information in the specimen identification chart in the Southern Ocean (SO). In this study, we aim to improve our understanding of the biodiversity of Kidderia (Dall 1876) through molecular and morphological comparisons of Antarctic and Subantarctic taxa. The microbivalves of the genus Kidderia are small brooding organisms that inhabit intertidal and shallow subtidal rocky ecosystems. This genus represents an interesting model to test the vicariance and dispersal hypothesis in the biogeography of the SO. However, the description of Kidderia species relies on a few morphological characters and biogeographic records that raise questions about the true diversity in the group. Here we will define the specimens collected with genetic tools, delimiting their respective boundaries across provinces of the SO, validating the presence of two species of Kidderia. Through the revision of taxonomic issues and species delimitation, it was possible to report that the Antarctic species is Kidderia subquadrata and the species recorded in the Subantarctic islands Diego Ramirez, South Georgia and the Kerguelen Archipelago is Kidderia minuta. The divergence time estimation suggests the origin and diversification of Kidderia lineages are related to historical vicariant processes probably associated with the separation of the continental landmasses close to the late Eocene. |
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1044 |
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ISSN |
1432-2056 |
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yes |
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8004 |
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Danish A. Ahmed, Emma J. Hudgins, Ross N. Cuthbert, Phillip J. Haubrock, David Renault, Elsa Bonnaud, Christophe Diagne, Franck Courchamp |
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Title |
Modelling the damage costs of invasive alien species |
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Year |
2021 |
Publication |
Biological Invasions |
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The rate of biological invasions is growing unprecedentedly, threatening ecological and socioeconomic systems worldwide. Quantitative understandings of invasion temporal trajectories are essential to discern current and future economic impacts of invaders, and then to inform future management strategies. Here, we examine the temporal trends of cumulative invasion costs by developing and testing a novel mathematical model with a population dynamical approach based on logistic growth. This model characterises temporal cost developments into four curve types (I–IV), each with distinct mathematical and qualitative properties, allowing for the parameterization of maximum cumulative costs, carrying capacities and growth rates. We test our model using damage cost data for eight genera (Rattus, Aedes, Canis, Oryctolagus, Sturnus, Ceratitis, Sus and Lymantria) extracted from the InvaCost database—which is the most up-to-date and comprehensive global compilation of economic cost estimates associated with invasive alien species. We find fundamental differences in the temporal dynamics of damage costs among genera, indicating they depend on invasion duration, species ecology and impacted sectors of economic activity. The fitted cost curves indicate a lack of broadscale support for saturation between invader density and impact, including for Canis, Oryctolagus and Lymantria, whereby costs continue to increase with no sign of saturation. For other taxa, predicted saturations may arise from data availability issues resulting from an underreporting of costs in many invaded regions. Overall, this population dynamical approach can produce cost trajectories for additional existing and emerging species, and can estimate the ecological parameters governing the linkage between population dynamics and cost dynamics. |
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136 |
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1573-1464 |
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yes |
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8090 |
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David Byrne, Jeff Polton, Colin Bell |
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Title |
Creation of a global tide analysis dataset: Application of NEMO and an offline objective analysis scheme |
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2021 |
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Journal of Operational Oceanography |
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1-14 |
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Abstract |
The accurate prediction of tides is vital for the operation of many industries, early warning of coastal flooding and scientific understanding of ocean processes. In this paper, we describe the creation method of a global dataset of tidal harmonics using NEMO (Nucleus for European Modelling of the Ocean) for the first time and an offline objective analysis scheme. Data are assimilated as part of a post-processing step, reducing the computational resources required. A reduced ensemble of tidal harmonics is generated, where each member is run for a shorter period of time than a central background state. This ensemble is used to estimate a single background covariance state, which is used for analysis. Output is validated using an ensemble of objective analyses. For each ensemble member, random selections of observations are omitted and validation is performed at these locations. Improvements in both Mean Absolute Error (MAE) and correlation coefficients (R2) are seen across all 6 of the largest diurnal and semi-diurnal constituents. MAEs in amplitude and phase are reduced by up to 78% and 89%, respectively, and correlations by as much as 0.14. In addition, the majority of locations (between 70 and 80%) see significant improvement. |
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688 |
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1755-876X |
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1755-876X |
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yes |
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8338 |
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