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Author |
Hila Levy, Steven R Fiddaman, Juliana A Vianna, Daly Noll, Gemma V Clucas, Jasmine K H Sidhu, Michael J Polito, Charles A Bost, Richard A Phillips, Sarah Crofts, Gary D Miller, Pierre Pistorius, Francesco Bonnadonna, Céline Le Bohec, Andrés Barbosa, Phil Trathan, Andrea Raya Rey, Laurent A F Frantz, Tom Hart, Adrian L Smit |
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Title |
Evidence of Pathogen-Induced Immunogenetic Selection across the Large Geographic Range of a Wild Seabird |
Type  |
Journal |
| |
Year |
2020 |
Publication |
Molecular Biology and Evolution |
Abbreviated Journal |
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Volume |
37 |
Issue |
6 |
Pages |
1708-1726 |
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Keywords |
immunogenetics, positive selection, Toll-like receptors, pathogen-mediated selection, Antarctica and Southern Ocean, Gentoo penguin |
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Abstract |
Over evolutionary time, pathogen challenge shapes the immune phenotype of the host to better respond to an incipient threat. The extent and direction of this selection pressure depend on the local pathogen composition, which is in turn determined by biotic and abiotic features of the environment. However, little is known about adaptation to local pathogen threats in wild animals. The Gentoo penguin (Pygoscelis papua) is a species complex that lends itself to the study of immune adaptation because of its circumpolar distribution over a large latitudinal range, with little or no admixture between different clades. In this study, we examine the diversity in a key family of innate immune genes—the Toll-like receptors (TLRs)—across the range of the Gentoo penguin. The three TLRs that we investigated present varying levels of diversity, with TLR4 and TLR5 greatly exceeding the diversity of TLR7. We present evidence of positive selection in TLR4 and TLR5, which points to pathogen-driven adaptation to the local pathogen milieu. Finally, we demonstrate that two positively selected cosegregating sites in TLR5 are sufficient to alter the responsiveness of the receptor to its bacterial ligand, flagellin. Taken together, these results suggest that Gentoo penguins have experienced distinct pathogen-driven selection pressures in different environments, which may be important given the role of the Gentoo penguin as a sentinel species in some of the world’s most rapidly changing environments. |
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137,354 |
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Bachelor's thesis |
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ISSN |
0737-4038 |
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Approved |
yes |
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Call Number |
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Serial |
7663 |
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Author |
B. Lauer, R. Grandin, Y. Klinger |
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Title |
Fault Geometry and Slip Distribution of the 2013 Mw 7.7 Balochistan Earthquake From Inversions of SAR and Optical Data |
Type |
Journal |
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Year |
2020 |
Publication |
Journal of Geophysical Research: Solid Earth |
Abbreviated Journal |
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Volume |
125 |
Issue |
7 |
Pages |
e2019JB018380 |
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Keywords |
Balochistan earthquake earthquake rupture modeling earthquake source processes InSAR optical data shallow slip deficit |
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Abstract |
The 2013 Mw 7.7 Balochistan earthquake ruptured the Hoshab fault (Pakistan) over 200 km. It was dominated by left-lateral slip, with a secondary reverse component. By combining optical (SPOT 5 and Landsat 8) and radar satellite data (RADARSAT-2 and TerraSAR-X ScanSAR), we derive the 3-D coseismic displacement field and the slip distribution. Our modeling strategy involves two successive inversions allowing to explore first the fault geometry and then slip distribution. Following a statistical analysis of the coseismic surface trace, the fault is discretized into 16 segments. To determine the dip angle and down-dip width of the segments, we then perform a non-linear elastic inversion of the geodetic data set. Using output of this model, we prescribe the fault geometry and linearly invert for slip at depth with refined discretization. Results show a decrease of the fault dip, reaching 50° in the central part of the fault that structurally connects the two sub-vertical terminations dipping at >70°. The distribution of strike-slip forms a shallow continuous patch (0–8 km) that peaks at 12.7 m of slip near the epicenter. Reverse slip is distributed on several patches and becomes shallower near the southern termination, where it peaks at 5.7 m. Our model shows an absence of shallow slip deficit (SSD), as for other Mw 7.5 + strike-slip earthquakes elsewhere, hence suggesting that SSD is only found for lesser magnitude earthquakes. We speculate that moment magnitude is a key element in the occurrence of SSD. |
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Programme |
133 |
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ISSN |
2169-9356 |
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yes |
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Call Number |
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Serial |
7664 |
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Author |
Vincent A. Viblanc, Quentin Schull, Antoine Stier, Laureline Durand, Emilie Lefol, Jean-Patrice Robin, Sandrine Zahn, Pierre Bize, François Criscuolo |
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Title |
Foster rather than biological parental telomere length predicts offspring survival and telomere length in king penguins |
Type |
Journal |
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Year |
2020 |
Publication |
Molecular Ecology |
Abbreviated Journal |
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Volume |
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Issue |
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Pages |
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Keywords |
gene and early life environmental effects growth penguins reproduction investment telomere |
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Abstract |
Because telomere length and dynamics relate to individual growth, reproductive investment and survival, telomeres have emerged as possible markers of individual quality. Here, we tested the hypothesis that, in species with parental care, parental telomere length can be a marker of parental quality that predicts offspring phenotype and survival. In king penguins (Aptenodytes patagonicus), we experimentally swapped the single egg of 66 breeding pairs just after egg laying to disentangle the contribution of prelaying parental quality (e.g., genetics, investment in the egg) and/or postlaying parental quality (e.g., incubation, postnatal feeding rate) on offspring growth, telomere length and survival. Parental quality was estimated through the joint effects of biological and foster parent telomere length on offspring traits, both soon after hatching (day 10) and at the end of the prewinter growth period (day 105). We expected that offspring traits would be mostly related to the telomere lengths (i.e., quality) of biological parents at day 10 and to the telomere lengths of foster parents at day 105. Results show that chick survival up to 10 days was negatively related to biological fathers’ telomere length, whereas survival up to 105 days was positively related to foster fathers’ telomere lengths. Chick growth was not related to either biological or foster parents’ telomere length. Chick telomere length was positively related to foster mothers’ telomere length at both 10 and 105 days. Overall, our study shows that, in a species with biparental care, parents’ telomere length is foremost a proxy of postlaying parental care quality, supporting the “telomere – parental quality hypothesis.” |
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Programme |
119 |
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ISSN |
1365-294X |
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Approved |
yes |
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Call Number |
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Serial |
7665 |
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Author |
Liubomira Romanova, Charles Stépanoff, Norbert Telmon, Eric Crubézy |
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Title |
Health access inequities and magic medicine: the first ancient evidence? |
Type |
Journal |
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Year |
2020 |
Publication |
The Lancet |
Abbreviated Journal |
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Volume |
395 |
Issue |
10233 |
Pages |
1343-1344 |
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Keywords |
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Abstract |
Inequities in access to the latest advances in health care and effective drugs constitute public health problems today,1 but was this also the case in ancient societies when practitioners used traditional medicines with limited means? The excavation of frozen graves in Yakutia (present day eastern Siberia, Russia) dating from 1700 CE2 led to the identification of a woman, buried almost naked, covered with a magnificent robe and with half a horse bit in her mouth (figure). The other half of the horse bit was found in the trunk behind her head with her earrings, bracelets, and signet rings. |
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Programme |
1038 |
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Address |
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Corporate Author |
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Thesis |
Bachelor's thesis |
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Publisher |
Elsevier |
Place of Publication |
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Series Editor |
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Edition |
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ISSN |
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ISBN |
0140-6736, 1474-547X |
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Notes |
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Approved |
yes |
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Call Number |
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Serial |
7666 |
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| Permanent link to this record |
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Author |
Sam L. Cox, Matthieu Authier, Florian Orgeret, Henri Weimerskirch, Christophe Guinet |
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Title |
High mortality rates in a juvenile free-ranging marine predator and links to dive and forage ability |
Type |
Journal |
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Year |
2020 |
Publication |
Ecology and Evolution |
Abbreviated Journal |
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Volume |
10 |
Issue |
1 |
Pages |
410-430 |
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Keywords |
bio-logging early life foraging ecology juvenile mortality Mirounga leonina southern elephant seal survival analyses |
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Abstract |
High juvenile mortality rates are typical of many long-lived marine vertebrate predators. Insufficient development in dive and forage ability is considered a key driver of this. However, direct links to survival outcome are sparse, particularly in free-ranging marine animals that may not return to land. In this study, we conduct exploratory investigations toward early mortality in juvenile southern elephant seals Mirounga leonina. Twenty postweaning pups were equipped with (a) a new-generation satellite relay data tag, capable of remotely transmitting fine-scale behavioral movements from accelerometers, and (b) a location transmitting only tag (so that mortality events could be distinguished from device failures). Individuals were followed during their first trip at sea (until mortality or return to land). Two analyses were conducted. First, the behavioral movements and encountered environmental conditions of nonsurviving pups were individually compared to temporally concurrent observations from grouped survivors. Second, common causes of mortality were investigated using Cox's proportional hazard regression and penalized shrinkage techniques. Nine individuals died (two females and seven males) and 11 survived (eight females and three males). All but one individual died before the return phase of their first trip at sea, and all but one were negatively buoyant. Causes of death were variable, although common factors included increased horizontal travel speeds and distances, decreased development in dive and forage ability, and habitat type visited (lower sea surface temperatures and decreased total [eddy] kinetic energy). For long-lived marine vertebrate predators, such as the southern elephant seal, the first few months of life following independence represent a critical period, when small deviations in behavior from the norm appear sufficient to increase mortality risk. Survival rates may subsequently be particularly vulnerable to changes in climate and environment, which will have concomitant consequences on the demography and dynamics of populations. |
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Programme |
109,1201 |
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Corporate Author |
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Thesis |
Bachelor's thesis |
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Publisher |
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Place of Publication |
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Summary Language |
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Original Title |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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ISSN |
2045-7758 |
ISBN |
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Medium |
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Area |
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Notes |
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Approved |
yes |
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Call Number |
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Serial |
7667 |
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| Permanent link to this record |
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Author |
Ross J. Turner, Martin Gal, Mark A. Hemer, Anya M. Reading |
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Title |
Impacts of the Cryosphere and Atmosphere on Observed Microseisms Generated in the Southern Ocean |
Type |
Journal |
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Year |
2020 |
Publication |
Journal of Geophysical Research: Earth Surface |
Abbreviated Journal |
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Volume |
125 |
Issue |
2 |
Pages |
e2019JF005354 |
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Keywords |
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Abstract |
The Southern Ocean (in the region 60–180° E) south of the Indian Ocean, Australia, and the West Pacific is noted for the frequent occurrence and severity of its storms. These storms give rise to high-amplitude secondary microseisms from sources, including the deep ocean regions, and primary microseisms where the swells impinge on submarine topographic features. A better understanding of the varying microseism wavefield enables improvements to seismic imaging and development of proxy observables to complement sparse in situ wave observations and hindcast models of the global ocean wave climate. We analyze 12–26 years of seismic data from 11 seismic stations either on the East Antarctic coast or sited in the Indian Ocean, Australia, and New Zealand. The power spectral density of the seismic wavefield is calculated to explore how the time-changing microseism intensity varies with (i) sea ice coverage surrounding Antarctica and (ii) the Southern Annular Mode (SAM) climate index. Variations in sea ice extent are found to be the dominant control on the microseism intensity at Antarctic stations, which exhibit a seasonal pattern phase-shifted by 4–5 months compared to stations in other continents. Peaks in extremal intensity at East Antarctic stations occur in March–April, with the highest peaks for secondary microseisms occurring during negative SAM events. This relationship between microseism intensity and the SAM index is opposite to that observed on the Antarctic Peninsula. This work informs the complexity of microseism amplitudes in the Southern Hemisphere and assists ongoing interdisciplinary investigations of interannual variability and long-term trends. |
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Programme |
133 |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
2169-9011 |
ISBN |
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Approved |
yes |
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Call Number |
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Serial |
7668 |
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| Permanent link to this record |
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Author |
Frédéric Angelier, Olivier Chastel, Adam Z. Lendvai, Charline Parenteau, Henri Weimerskirch, John C. Wingfield |
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Title |
When do older birds better resist stress? A study of the corticosterone stress response in snow petrels |
Type |
Journal |
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Year |
2020 |
Publication |
Biology letters |
Abbreviated Journal |
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Volume |
16 |
Issue |
1 |
Pages |
20190733 |
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Keywords |
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Abstract |
Life-history theory predicts that, to optimize their fitness, individuals should increase their reproductive effort as their residual reproductive value decreases. Accordingly, several studies have shown that individuals downregulate their glucocorticoid stress response (a proxy of reproductive investment in vertebrates) as they age, and as the subsequent reproductive value decreases. However, and surprisingly, results appear inconsistent, suggesting that the environmental context or the individual state may affect the relationship between age and reproductive effort. Here, we tested for the first time this hypothesis, and more specifically, whether this attenuation of the corticosterone stress response with advancing age depends on the energetic status of individuals. We compared the influence of age on the corticosterone stress response between fasting and non-fasting breeding snow petrels (Pagodroma nivea), an extremely long-lived bird. As expected, we found that the corticosterone stress response was attenuated in old petrels, but only when they were not fasting. Interestingly, this pattern was not apparent in fasting petrels, suggesting that old birds downregulate their corticosterone stress response and increase their parental investment only when they are in good body condition. At the ultimate level, old individuals may maintain a strong corticosterone stress response when fasting because the survival costs of increased stress resistance and parental effort might then outweigh their reproductive benefits. |
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Programme |
109 |
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Thesis |
Bachelor's thesis |
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Publisher |
Royal Society |
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yes |
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Serial |
7669 |
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| Permanent link to this record |
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Author |
Vojtěch Brlík, Jaroslav Koleček, Malcolm Burgess, Steffen Hahn, Diana Humple, Miloš Krist, Janne Ouwehand, Emily L. Weiser, Peter Adamík, José A. Alves, Debora Arlt, Sanja Barišić, Detlef Becker, Eduardo J. Belda, Václav Beran, Christiaan Both, Susana P. Bravo, Martins Briedis, Bohumír Chutný, Davor Ćiković, Nathan W. Cooper, Joana S. Costa, Víctor R. Cueto, Tamara Emmenegger, Kevin Fraser, Olivier Gilg, Marina Guerrero, Michael T. Hallworth, Chris Hewson, Frédéric Jiguet, James A. Johnson, Tosha Kelly, Dmitry Kishkinev, Michel Leconte, Terje Lislevand, Simeon Lisovski, Cosme López, Kent P. McFarland, Peter P. Marra, Steven M. Matsuoka, Piotr Matyjasiak, Christoph M. Meier, Benjamin Metzger, Juan S. Monrós, Roland Neumann, Amy Newman, Ryan Norris, Tomas Pärt, Václav Pavel, Noah Perlut, Markus Piha, Jeroen Reneerkens, Christopher C. Rimmer, Amélie Roberto‐Charron, Chiara Scandolara, Natalia Sokolova, Makiko Takenaka, Dirk Tolkmitt, Herman van Oosten, Arndt H. J. Wellbrock, Hazel Wheeler, Jan van der Winden, Klaudia Witte, Bradley K. Woodworth, Petr Procházka |
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Title |
Weak effects of geolocators on small birds: A meta-analysis controlled for phylogeny and publication bias |
Type |
Journal |
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Year |
2020 |
Publication |
Journal of Animal Ecology |
Abbreviated Journal |
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Volume |
89 |
Issue |
1 |
Pages |
207-220 |
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Keywords |
condition migration phenology reproduction return rate survival tag effect tracking device |
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Abstract |
Currently, the deployment of tracking devices is one of the most frequently used approaches to study movement ecology of birds. Recent miniaturization of light-level geolocators enabled studying small bird species whose migratory patterns were widely unknown. However, geolocators may reduce vital rates in tagged birds and may bias obtained movement data. There is a need for a thorough assessment of the potential tag effects on small birds, as previous meta-analyses did not evaluate unpublished data and impact of multiple life-history traits, focused mainly on large species and the number of published studies tagging small birds has increased substantially. We quantitatively reviewed 549 records extracted from 74 published and 48 unpublished studies on over 7,800 tagged and 17,800 control individuals to examine the effects of geolocator tagging on small bird species (body mass <100 g). We calculated the effect of tagging on apparent survival, condition, phenology and breeding performance and identified the most important predictors of the magnitude of effect sizes. Even though the effects were not statistically significant in phylogenetically controlled models, we found a weak negative impact of geolocators on apparent survival. The negative effect on apparent survival was stronger with increasing relative load of the device and with geolocators attached using elastic harnesses. Moreover, tagging effects were stronger in smaller species. In conclusion, we found a weak effect on apparent survival of tagged birds and managed to pinpoint key aspects and drivers of tagging effects. We provide recommendations for establishing matched control group for proper effect size assessment in future studies and outline various aspects of tagging that need further investigation. Finally, our results encourage further use of geolocators on small bird species but the ethical aspects and scientific benefits should always be considered. |
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Programme |
1036 |
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Series Issue |
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Edition |
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ISSN |
1365-2656 |
ISBN |
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Medium |
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Notes |
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Approved |
yes |
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Call Number |
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Serial |
7670 |
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| Permanent link to this record |
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Author |
Hannah Joy Kriesell, Céline Le Bohec, Alexander F. Cerwenka, Moritz Hertel, Jean-Patrice Robin, Bernhard Ruthensteiner, Manfred Gahr, Thierry Aubin, Daniel Normen Düring |
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Title |
Vocal tract anatomy of king penguins: morphological traits of two-voiced sound production |
Type |
Journal |
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Year |
2020 |
Publication |
Frontiers in Zoology |
Abbreviated Journal |
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Volume |
17 |
Issue |
1 |
Pages |
5 |
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Keywords |
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Abstract |
The astonishing variety of sounds that birds can produce has been the subject of many studies aiming to identify the underlying anatomical and physical mechanisms of sound production. An interesting feature of some bird vocalisations is the simultaneous production of two different frequencies. While most work has been focusing on songbirds, much less is known about dual-sound production in non-passerines, although their sound production organ, the syrinx, would technically allow many of them to produce “two voices”. Here, we focus on the king penguin, a colonial seabird whose calls consist of two fundamental frequency bands and their respective harmonics. The calls are produced during courtship and for partner and offspring reunions and encode the birds’ identity. We dissected, μCT-scanned and analysed the vocal tracts of six adult king penguins from Possession Island, Crozet Archipelago. |
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Programme |
119,137 |
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Corporate Author |
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Thesis |
Bachelor's thesis |
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Publisher |
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Place of Publication |
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Editor |
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Language |
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Summary Language |
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Series Editor |
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Edition |
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ISSN |
1742-9994 |
ISBN |
1742-9994 |
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Notes |
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Approved |
yes |
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Call Number |
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Serial |
7671 |
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| Permanent link to this record |
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Author |
Helle A. Pedersen, Nicolas Leroy, Dimitri Zigone, Martin Vallée, Adam T. Ringler, David C. Wilson |
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Title |
Using Component Ratios to Detect Metadata and Instrument Problems of Seismic Stations: Examples from 18 Yr of GEOSCOPE Data |
Type |
Journal |
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Year |
2020 |
Publication |
Seismological research letters |
Abbreviated Journal |
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Volume |
91 |
Issue |
1 |
Pages |
272-286 |
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Keywords |
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Abstract |
Replacement or deterioration of seismic instruments and the evolution of the installation conditions and sites can alter the seismic signal in very subtle ways; therefore, it is notoriously difficult to monitor the signal quality of permanent seismic stations. We present a simple way to characterize and monitor signal quality, using energy ratios between each pair of the three components, as a complement to existing methods. To calculate stable daily energy ratios over a large frequency range (0.01–5 Hz), we use the daily median energy ratio over all 5 min windows within the day. The method is applied to all GEOSCOPE stations, for continuous BH channel data collected since 2001. We show applications to identify past gain problems (stations ROCAM and CRZF), to provide feedback after field interventions at remote sites (Antarctic station DRV), and to shed light on complex instrument problems (stations ECH and KIP). Our results show that component energy ratios have excellent time resolution and that they are visually simple for identification of problems. They can be used both for ongoing continuous monitoring of the signal quality, or as a tool to identify past problems. The Python code to produce the results in this work and the Python code for daily monitoring used by GEOSCOPE are available (see Data and Resources). |
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