Abstract: .La densification du névé en glace est un processus essentiel à comprendre pour interpréter les enregistrements climatiques. Une bonne connaissance des mécanismes permet une datation précise de l'air capturé dans la glace lors de la fermeture des pores. Celle-ci est plus vieille que l'air capturé à cause du transport des gaz dans la colonne de névé plus rapide que la densification de celui-ci. Cette différence d'âge entre la glace et le gaz est généralement appelé le Δage. La densification de la neige consiste en un processus complexe de réarrangement de grains, de frittage et de déformation viscoplastique. Bien que le comportement viscoplastique du cristal de glace soit fortement anisotrope, les modèles de densification actuels ne tiennent pas compte de cette anisotropie. De plus, le caractère granulaire du névé affecte aussi sa densification. La relation entre la fermeture des pores et les mécanismes microstructuraux sous-jacents est encore méconnue. Le but de cette thèse est d'incorporer l'aspect granulaire ainsi que l'anisotropie du cristal de glace dans une approche de modélisation innovante de la densification. Des expériences sur l'indentation viscoplastique de cylindres monocristallins de glace ont été réalisées pour proposer une loi de contact basée sur la théorie de l'indentation, et prenant en compte la déformation préférentielle du cristal de glace sur les plans basaux. Cette loi de contact a été implémentée dans un code utilisant la méthode des éléments discrets pour prédire la densification du névé.La micro-tomographie aux rayons X a été utilisée pour caractériser ex situ le névé polaire en trois dimensions à différentes étapes de la densification (ρ= 0.55-0.88 g/cm3), i.e. pour différentes profondeurs (~23 à 130m). Une étude fine de la fermeture des pores et de différentes caractéristiques morphologiques et physiques a été réalisée pour les sites polaires Dome C et Lock In. Des essais mécaniques ont aussi été réalisés in situ sur du névé extrait de Dome C dans le but de modéliser la densification du névé. Les observations microstructurales des expériences ex situ et in situ révèlent d'importantes différences dues aux vitesses relativement importantes utilisées lors des essais mécaniques. Ces vitesses rapides permettent de découpler la contribution des cinétiques de diffusion de la contribution viscoplastique de la déformation. Les effets de ces contributions sur la morphologie des pores et leurs fermetures sont discutés. Pour caractériser la fermeture des pores, cette thèse propose un indice de connectivité définit par le ratio entre le volume du plus gros pore sur la porosité totale. En effet, cet indice est plus approprié lors de l'utilisation de la tomographie aux rayons X que le ratio de pores fermés pour prédire la densité au close-off.

Abstract: The development of a computationally efficient scheme for predicting the global distribution of total water level (TWL) is discussed. The ocean model is barotropic, has a horizontal grid spacing of 1/12°, and is based on the NEMO modeling framework. It is forced by the gravitational potential and hourly atmospheric fields for 2008. Hourly time spacing was required to resolve the S2 tide in global air pressure and wind. The predicted tide in water deeper than 400 m was nudged to TPXO8 “observations” of tidal elevation or current using a scheme called tidal nudging (Kodaira et al., 2019). The benefit of nudging horizontal velocity in the momentum equation, compared to sea level in the continuity equation, is discussed. Tidal nudging is shown to improve tidal predictions of sea level at the coast, particularly at the S2 tidal frequency. The predicted radiational S2 tide in sea level forced solely by the S2 tide in global air pressure reaches amplitudes exceeding 80 cm. Decreasing the time spacing of the air pressure forcing from 1 h to 3 h reduces the S2 amplitude in air pressure by a factor of 0.82, consistent with expectations based on Fourier analysis. This highlights the importance of using hourly atmospheric forcing when predicting the global sea level response to atmospheric forcing. The radiational S2 tide in sea level is subject to strong nonlinear interaction with the gravitational tide, leading to a pronounced attenuation of the radiational S2 tide. The attenuation is explained by an increase in effective bottom friction at the S2 frequency due to the presence of the gravitational tide. Four schemes for predicting TWL are evaluated to quantify the impact of tidal nudging and nonlinear interaction of tide and surge. Using TWLs observed by 304 coastal tide gauges, we show it is necessary to include both tidal nudging and nonlinear interaction. Plans for the further development of an operational flood forecast system for the Canadian coast, based on the above model, are discussed.

Abstract: The genus Borrelia consists of evolutionarily and genetically diverse bacterial species that cause a variety of diseases in humans and domestic animals. These vector-borne spirochetes can be classified into two major evolutionary groups, the Lyme borreliosis clade and the relapsing fever clade, both of which have complex transmission cycles during which they interact with multiple host species and arthropod vectors. Molecular, ecological, and evolutionary studies have each provided significant contributions towards our understanding of the natural history, biology and evolutionary genetics of Borrelia species; however, integration of these studies is required to identify the evolutionary causes and consequences of the genetic variation within and among Borrelia species. For example, molecular and genetic studies have identified the adaptations that maximize fitness components throughout the Borrelia lifecycle and enhance transmission efficacy but provide limited insights into the evolutionary pressures that have produced them. Ecological studies can identify interactions between Borrelia species and the vertebrate hosts and arthropod vectors they encounter and the resulting impact on the geographic distribution and abundance of spirochetes but not the genetic or molecular basis underlying these interactions. In this review we discuss recent findings on the evolutionary genetics from both of the evolutionarily distinct clades of Borrelia species. We focus on connecting molecular interactions to the ecological processes that have driven the evolution and diversification of Borrelia species in order to understand the current distribution of genetic and molecular variation within and between Borrelia species.

Abstract: In many bird species, reproductive partners sing together each time they meet on the nest. Because these nest ceremonies typically correspond to the return of one partner from foraging and to the subsequent departure of the other partner, we hypothesized that the foraging decisions of departing birds may be facilitated by the vocalizations accompanying their partner's return on the nest, providing these vocalizations reflect foraging conditions. We examined this hypothesis in pairs of Adélie penguins, Pygoscelis adeliae, by longitudinally monitoring their nest vocalizations and their spatial distribution when foraging at sea across the guard stage, when both parents regularly alternate foraging at sea and chick attendance at the nest. We found that the acoustic characteristics of the vocalizations produced during nest relief ceremonies reflected some characteristics of the foraging trips of both the returning and departing partners. However, these acoustic characteristics differed between partners and were differently related to their foraging behaviour. Accordingly, departing individuals did not adopt the same foraging behaviour as that of returning individuals. Nest vocalizations therefore do not appear to represent cues facilitating the foraging decisions of departing birds, but they may rather reflect the arousal of partners, which differently correlates with the foraging behaviour of the returning and departing individuals. Our study highlights an interplay between the vocalizations produced on the nest by reproductive partners and their foraging behaviour, thereby broadening the scope of animal vocalizations and opening a novel perspective on the regulation of foraging strategies. However, our exploratory study also highlights the complexity of examining this interplay, as the effects of nest vocalizations on foraging decisions may be complicated by other factors (e.g. intrinsic foraging capacity). This calls for the use of additional and experimental approaches (e.g. vocalization playbacks) to clarify the role of nest vocalizations as potential mediators of foraging decisions.