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Librado P, Der Sarkissian C, Ermini L, Schubert M, Jónsson H, Albrechtsen A, Fumagalli M, Yang MA, Gamba C, Seguin-Orlando A, Mortensen CD, Petersen B, Hoover CA, Lorente-Galdos B, Nedoluzhko A, Boulygina E, Tsygankova S, Neuditschko M, Jagannathan V, Thèves C, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, Sicheritz-Ponten T, Popov R, Grigoriev S, Alekseev AN, Rubin EM, McCue M, Rieder S, Leeb T, Tikhonov A, Crubézy E, Slatkin M, Marques-Bonet T, Nielsen R, Willerslev E, Kantanen J, Prokhortchouk E, Orlando L |
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Title  |
Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments. |
Type |
Journal Article |
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Year |
2015 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
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Volume |
112 |
Issue |
50 |
Pages |
6889-97 |
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Abstract |
Yakutia, Sakha Republic, in the Siberian Far East, represents one of the coldest places on Earth, with winter record temperatures dropping below -70 °C. Nevertheless, Yakutian horses survive all year round in the open air due to striking phenotypic adaptations, including compact body conformations, extremely hairy winter coats, and acute seasonal differences in metabolic activities. The evolutionary origins of Yakutian horses and the genetic basis of their adaptations remain, however, contentious. Here, we present the complete genomes of nine present-day Yakutian horses and two ancient specimens dating from the early 19th century and ∼5,200 y ago. By comparing these genomes with the genomes of two Late Pleistocene, 27 domesticated, and three wild Przewalski's horses, we find that contemporary Yakutian horses do not descend from the native horses that populated the region until the mid-Holocene, but were most likely introduced following the migration of the Yakut people a few centuries ago. Thus, they represent one of the fastest cases of adaptation to the extreme temperatures of the Arctic. We find cis-regulatory mutations to have contributed more than nonsynonymous changes to their adaptation, likely due to the comparatively limited standing variation within gene bodies at the time the population was founded. Genes involved in hair development, body size, and metabolic and hormone signaling pathways represent an essential part of the Yakutian horse adaptive genetic toolkit. Finally, we find evidence for convergent evolution with native human populations and woolly mammoths, suggesting that only a few evolutionary strategies are compatible with survival in extremely cold environments. |
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1038 |
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0027-8424 |
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yes |
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Call Number |
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Serial |
6319 |
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Author |
Librado Pablo, Der Sarkissian Clio, Ermini Luca, Schubert Mikkel, Jónsson Hákon, Albrechtsen Anders, Fumagalli Matteo, Yang Melinda A, Gamba Cristina, Seguin-Orlando Andaine, Mortensen Cecilie D, Petersen Bent, Hoover Cindi A, Lorente-Galdos Belen, Nedoluzhko Artem, Boulygina Eugenia, Tsygankova Svetlana, Neuditschko Markus, Jagannathan Vidhya, Thèves Catherine, Alfarhan Ahmed H, Alquraishi Saleh A, Al-Rasheid Khaled A S, Sicheritz-Ponten Thomas, Popov Ruslan, Grigoriev Semyon, Alekseev Anatoly N, Rubin Edward M, McCue Molly, Rieder Stefan, Leeb Tosso, Tikhonov Alexei, Crubézy Eric, Slatkin Montgomery, Marques-Bonet Tomas, Nielsen Rasmus, Willerslev Eske, Kantanen Juha, Prokhortchouk Egor, Orlando Ludovic, |
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Title |
Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments
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Type |
Journal Article |
| |
Year |
2015 |
Publication |
Proceedings of the National Academy of Sciences |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
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Volume |
112 |
Issue |
50 |
Pages |
201513696-201513696 |
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Keywords |
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Abstract |
Yakutia, Sakha Republic, in the Siberian Far East, represents one of the coldest places on Earth, with winter record temperatures dropping below -70 °C. Nevertheless, Yakutian horses survive all year round in the open air due to striking phenotypic adaptations, including compact body conformations, extremely hairy winter coats, and acute seasonal differences in metabolic activities. The evolutionary origins of Yakutian horses and the genetic basis of their adaptations remain, however, contentious. Here, we present the complete genomes of nine present-day Yakutian horses and two ancient specimens dating from the early 19th century and ∼5,200 y ago. By comparing these genomes with the genomes of two Late Pleistocene, 27 domesticated, and three wild Przewalski's horses, we find that contemporary Yakutian horses do not descend from the native horses that populated the region until the mid-Holocene, but were most likely introduced following the migration of the Yakut people a few centuries ago. Thus, they represent one of the fastest cases of adaptation to the extreme temperatures of the Arctic. We find cis-regulatory mutations to have contributed more than nonsynonymous changes to their adaptation, likely due to the comparatively limited standing variation within gene bodies at the time the population was founded. Genes involved in hair development, body size, and metabolic and hormone signaling pathways represent an essential part of the Yakutian horse adaptive genetic toolkit. Finally, we find evidence for convergent evolution with native human populations and woolly mammoths, suggesting that only a few evolutionary strategies are compatible with survival in extremely cold environments. |
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1038 |
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0027-8424 |
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yes |
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6068 |
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Author |
Boulinier, T. |
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Title |
Tracking the movements of disease spreaders: Not only migration matters. |
Type |
Communication |
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Year |
2016 |
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Abstract |
Oral communication at CEMEB & NUMEV Labex Worshop on Biologging and the Environment, December 5th 2016, Montpellier. |
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1151 |
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yes |
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Serial |
6851 |
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Author |
Dettai A, Berkani M, Lautredou A-C, Couloux A, Lecointre G, Ozouf-Costaz C, Gallut C, |
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Title |
Tracking the elusive monophyly of nototheniid fishes (Teleostei) with multiple mitochondrial and nuclear markers
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Type |
Journal Article |
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Year |
2012 |
Publication |
Marine Genomics |
Abbreviated Journal |
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Volume |
8 |
Issue |
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Pages |
49-58 |
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Keywords |
Cytochrome oxidase 1, Phylogeny, Congruence, Simultaneous analysis, |
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Abstract |
Since the first molecular study of the suborder Notothenioidei in 1994, many phylogenetic studies have been published. Among these, those with a sufficient number of taxa have all suggested that the Nototheniidae, as currently defined, is monophyletic only with the inclusion of the Channichthyidae, Artedidraconidae, Bathydraconidae and Harpagiferidae. This is corroborated by more recent studies including more taxa, but in these studies either the number of nuclear markers or the number of taxa included remained low. We obtained sequences for a large sampling covering most nototheniid genera for five markers described previously for other samplings (COI, Rhodopsin retrogene, Pkd1, HECW2, and SSRP1) and one nuclear marker never used before in phylogenetic inference (PPM1d). The topology for the combined analysis of the nuclear coding genes, as well as the topology for SSRP1 (non-coding) and the combined analysis for all markers all support the paraphyly of Nototheniidae, the genus Notothenia (including Paranotothenia) is the sister group of the clade Channichthyidae, Artedidraconidae, Bathydraconidae and Harpagiferidae, and genus Gobionotothen is a sister group to both. As in previous studies, Trematomus, Lepidonotothen and Patagonotothen form a clade that also includes Indonotothenia cyanobrancha. The position of Pleuragramma antarctica, Dissostichus species and Aethotaxis mitopteryx remains unstable and dependant on markers and analyses. |
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1124 |
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ISSN |
1874-7787 |
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yes |
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Call Number |
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Serial |
4021 |
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Author |
Ponchon Aurore, Grémillet David, Doligez Blandine, Chambert Thierry, Tveraa Torkild, González-Solís Jacob, Boulinier Thierry, |
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Title |
Tracking prospecting movements involved in breeding habitat selection: insights, pitfalls and perspectives
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Type |
Journal Article |
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Year |
2013 |
Publication |
Methods in Ecology and Evolution |
Abbreviated Journal |
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Volume |
4 |
Issue |
2 |
Pages |
143-150 |
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Keywords |
biotelemetry, breeding habitat choice, dispersal decisions, individual strategies, social information, spatial population ecology, |
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Abstract |
1. Prospecting allows individuals to gather information on the local quality of potential future breeding sites. In a variable and heterogeneous environment, it plays a major role in breeding habitat selection and potentially helps individuals make optimal dispersal decisions. Although prospecting movements, involving visits to other breeding sites, have been observed in many species at relatively fine spatial scales, little is known about their occurrence at larger scales. Furthermore, the adaptive value of dispersal strategies in response to environmental changes remain poorly investigated.
2. Here, our main objective is to highlight in what ways tracking devices could constitute powerful tools to study prospecting behaviours at various spatial scales. First, we stress the importance of considering prospecting movements involved in breeding habitat selection and we detail the type of data that can be collected. Then, we review the advantages and constraints associated with the use of tracking devices in this context and we suggest new perspectives to investigate the behavioural strategies adopted by individuals during breeding habitat selection processes and dispersal decisions.
3. The rapid development of new powerful electronic tools for tracking individual behaviour thus opens a wide range of opportunities. More specifically, it may allow a more thorough understanding of the role of scale-dependent dispersal behaviour in population responses to environmental changes.
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Programme |
333 |
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ISSN |
2041-210X |
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Approved |
yes |
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Call Number |
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Serial |
3981 |
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Author |
Mark A. Hindell, Ryan R. Reisinger, Yan Ropert-Coudert, Luis A. Hückstädt, Philip N. Trathan, Horst Bornemann, Jean-Benoît Charrassin, Steven L. Chown, Daniel P. Costa, Bruno Danis, Mary-Anne Lea, David Thompson, Leigh G. Torres, Anton P. Van de Putte, Rachael Alderman, Virginia Andrews-Goff, Ben Arthur, Grant Ballard, John Bengtson, Marthán N. Bester, Arnoldus Schytte Blix, Lars Boehme, Charles-André Bost, Peter Boveng, Jaimie Cleeland, Rochelle Constantine, Stuart Corney, Robert J. M. Crawford, Luciano Dalla Rosa, P. J. Nico de Bruyn, Karine Delord, Sébastien Descamps, Mike Double, Louise Emmerson, Mike Fedak, Ari Friedlaender, Nick Gales, Michael E. Goebel, Kimberly T. Goetz, Christophe Guinet, Simon D. Goldsworthy, Rob Harcourt, Jefferson T. Hinke, Kerstin Jerosch, Akiko Kato, Knowles R. Kerry, Roger Kirkwood, Gerald L. Kooyman, Kit M. Kovacs, Kieran Lawton, Andrew D. Lowther, Christian Lydersen, Phil O’B Lyver, Azwianewi B. Makhado, Maria E. I. Márquez, Birgitte I. McDonald, Clive R. McMahon, Monica Muelbert, Dominik Nachtsheim, Keith W. Nicholls, Erling S. Nordøy, Silvia Olmastroni, Richard A. Phillips, Pierre Pistorius, Joachim Plötz, Klemens Pütz, Norman Ratcliffe, Peter G. Ryan, Mercedes Santos, Colin Southwell, Iain Staniland, Akinori Takahashi, Arnaud Tarroux, Wayne Trivelpiece, Ewan Wakefield, Henri Weimerskirch, Barbara Wienecke, José C. Xavier, Simon Wotherspoon, Ian D. Jonsen, Ben Raymond |
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Title |
Tracking of marine predators to protect Southern Ocean ecosystems |
Type |
Journal |
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Year |
2020 |
Publication |
Nature |
Abbreviated Journal |
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Volume |
580 |
Issue |
7801 |
Pages |
87-92 |
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Keywords |
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Abstract |
Southern Ocean ecosystems are under pressure from resource exploitation and climate change1,2. Mitigation requires the identification and protection of Areas of Ecological Significance (AESs), which have so far not been determined at the ocean-basin scale. Here, using assemblage-level tracking of marine predators, we identify AESs for this globally important region and assess current threats and protection levels. Integration of more than 4,000 tracks from 17 bird and mammal species reveals AESs around sub-Antarctic islands in the Atlantic and Indian Oceans and over the Antarctic continental shelf. Fishing pressure is disproportionately concentrated inside AESs, and climate change over the next century is predicted to impose pressure on these areas, particularly around the Antarctic continent. At present, 7.1% of the ocean south of 40°S is under formal protection, including 29% of the total AESs. The establishment and regular revision of networks of protection that encompass AESs are needed to provide long-term mitigation of growing pressures on Southern Ocean ecosystems. |
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Programme |
394,1091,1182,1201 |
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Thesis |
Bachelor's thesis |
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Edition |
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ISSN |
1476-4687 |
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yes |
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Call Number |
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Serial |
7673 |
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Author |
Antoine Fages, Kristian Hanghøj, Naveed Khan, Charleen Gaunitz, Andaine Seguin-Orlando, Michela Leonardi, Christian McCrory Constantz, Cristina Gamba, Khaled A. S. Al-Rasheid, Silvia Albizuri, Ahmed H. Alfarhan, Morten Allentoft, Saleh Alquraishi, David Anthony, Nurbol Baimukhanov, James H. Barrett, Jamsranjav Bayarsaikhan, Norbert Benecke, Eloísa Bernáldez-Sánchez, Luis Berrocal-Rangel, Fereidoun Biglari, Sanne Boessenkool, Bazartseren Boldgiv, Gottfried Brem, Dorcas Brown, Joachim Burger, Eric Crubézy, Linas Daugnora, Hossein Davoudi, Peter de Barros Damgaard, María de los Ángeles de Chorro y de Villa-Ceballos, Sabine Deschler-Erb, Cleia Detry, Nadine Dill, Maria do Mar Oom, Anna Dohr, Sturla Ellingvåg, Diimaajav Erdenebaatar, Homa Fathi, Sabine Felkel, Carlos Fernández-Rodríguez, Esteban García-Viñas, Mietje Germonpré, José D. Granado, Jón H. Hallsson, Helmut Hemmer, Michael Hofreiter, Aleksei Kasparov, Mutalib Khasanov, Roya Khazaeli, Pavel Kosintsev, Kristian Kristiansen, Tabaldiev Kubatbek, Lukas Kuderna, Pavel Kuznetsov, Haeedeh Laleh, Jennifer A. Leonard, Johanna Lhuillier, Corina Liesau von Lettow-Vorbeck, Andrey Logvin, Lembi Lõugas, Arne Ludwig, Cristina Luis, Ana Margarida Arruda, Tomas Marques-Bonet, Raquel Matoso Silva, Victor Merz, Enkhbayar Mijiddorj, Bryan K. Miller, Oleg Monchalov, Fatemeh A. Mohaseb, Arturo Morales, Ariadna Nieto-Espinet, Heidi Nistelberger, Vedat Onar, Albína H. Pálsdóttir, Vladimir Pitulko, Konstantin Pitskhelauri, Mélanie Pruvost, Petra Rajic Sikanjic, Anita Rapan Papeša, Natalia Roslyakova, Alireza Sardari, Eberhard Sauer, Renate Schafberg, Amelie Scheu, Jörg Schibler, Angela Schlumbaum, Nathalie Serrand, Aitor Serres-Armero, Beth Shapiro, Shiva Sheikhi Seno, Irina Shevnina, Sonia Shidrang, John Southon, Bastiaan Star, Naomi Sykes, Kamal Taheri, William Taylor, Wolf-Rüdiger Teegen, Tajana Trbojević Vukičević, Simon Trixl, Dashzeveg Tumen, Sainbileg Undrakhbold, Emma Usmanova, Ali Vahdati, Silvia Valenzuela-Lamas, Catarina Viegas, Barbara Wallner, Jaco Weinstock, Victor Zaibert, Benoit Clavel, Sébastien Lepetz, Marjan Mashkour, Agnar Helgason, Kári Stefánsson, Eric Barrey, Eske Willerslev, Alan K. Outram, Pablo Librado, Ludovic Orlando |
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Title |
Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series |
Type |
Journal |
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Year |
2019 |
Publication |
Cell |
Abbreviated Journal |
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Volume |
177 |
Issue |
6 |
Pages |
1419-1435.e31 |
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Keywords |
ancient DNA animal breeding diversity domestication equestrian civilizations extinct lineages horses management mules selection |
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Abstract |
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Programme |
1038 |
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ISSN |
0092-8674, 1097-4172 |
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Approved |
yes |
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Call Number |
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Serial |
8011 |
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Author |
O'Toole M., Sergi S., Cotté C., Bost C.A., Guinet C., Weimerskirch H., Hindell M.A., d'Ovidio F. |
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Title |
Tracking ecological hotspots in the Southern Ocean: Antarctic Circumpolar Current as a space-time-trophic conveyer belt |
Type |
Poster |
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Year |
2017 |
Publication |
Scar symposium |
Abbreviated Journal |
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Volume |
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Issue |
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Pages |
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Abstract |
Satellite data analysis has showed that the environment of the open ocean – uniform and homogeneous to our naked eyes – is in fact populated by strongly contrasted physical features, whose lifetime occurs on ecologically relevant spatial and temporal scales. This dynamical landscape has a primary structuring role on marine ecosystems in particular in the pelagic regions. Pinpointing which physical features are the most ecologically relevant, tracking them, and estimating their lifetime and inter-annual variability are a major challenge for ecologists. Here, we combine bio-logging data and advanced multi-satellite diagnostic tools to track pelagic ecological hotspots in the Indian sector of the Southern Ocean. By clustering predator foraging sites according to diet, we identify five regional hotspots. We interpret these regions by pathways of iron and ageing of the ecosystem from primary production to higher trophic organisms. These results are a first step for the scientific basis of a marine protected area (MPA) proposal to the Convention for the Conservation of Antarctic Marine Living Resources (CCAMLR).
(PDF) . Available from: TrackingecologicalhotspotsintheSouthernOceanAntarcticCircumpolarCurrentasaspace-time-trophicconveyerbelt”>https://www.researchgate.net/publication/320510489TrackingecologicalhotspotsintheSouthernOceanAntarcticCircumpolarCurrentasaspace-time-trophicconveyerbelt [accessed Sep 01 2018]. |
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1201 |
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yes |
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Serial |
7316 |
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Author |
Gallut, C., Dettai , A., Lautredou, A.c., Couloux A., Lecointre, G., Ozouf-costaz, C |
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Title |
Tracking Dragonfish monophyly (Bathydraconidae, Notothenioidei, Teleostei). IPY 2012 « From Knowledge to Action », Montréal, April, 22-27. |
Type |
Conference - International - Poster |
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Year |
2012 |
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1124 |
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Approved |
yes |
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Call Number |
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Serial |
4097 |
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Author |
Boulinier, T. |
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Title |
Tracking antibodies in wild animals: is it still useful ? |
Type |
Communication |
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Year |
2017 |
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Abbreviated Journal |
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Abstract |
Oral presentation at the 2017 meeting of the Immuno-ecoogy group of Réseazu Ecologie des Interactions Durables, 14-15 Septembre 2017, Montpellier. |
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Programme |
1151 |
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Conference |
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Notes |
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Approved |
yes |
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Call Number |
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Serial |
6762 |
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| Permanent link to this record |
