Abstract: Bio-logging is a new interdisciplinary research area at the intersection of animal behavior and bioengineering. It involves several applications such as determination of specific parameters (attitude, acceleration, and position) via a new generation of mechatronic systems. The aim of this paper concerns the animal motion estimation problem using low-cost sensors fusion. A quaternion-based nonlinear observer for the tracking of rigid body attitude (orientation) and heading using measurements provided from low cost inertial and magnetic sensors is presented. The algorithm combines low-frequency, 3-axis accelerometer and 3-axis magnetometer, data with high frequency 3-axis gyroscope measurement. Then, to increase the performance and reduce the computational requirements, we exploit the sensor readings directly in the designed observer. Using the estimated attitude, the linear acceleration is then derived. This latter will be used in the future to evaluate the animal energy index and its mechanical work. Finally, some experimental results, using the measurements provided by an inertial sensor put on dog are given to illustrate the efficiency of the proposed algorithm.