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Title |
Evidence of Pathogen-Induced Immunogenetic Selection across the Large Geographic Range of a Wild Seabird |
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Journal |
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Year |
2020 |
Publication |
Molecular Biology and Evolution |
Abbreviated Journal |
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Volume |
37 |
Issue |
6 |
Pages |
1708-1726 |
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Keywords |
immunogenetics, positive selection, Toll-like receptors, pathogen-mediated selection, Antarctica and Southern Ocean, Gentoo penguin |
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137,354 |
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Bachelor's thesis |
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0737-4038 |
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yes |
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7663 |
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Title |
Genome-wide analyses reveal drivers of penguin diversification |
Type |
Journal |
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Year |
2020 |
Publication |
Proceedings of the National Academy of Sciences |
Abbreviated Journal |
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Volume |
117 |
Issue |
36 |
Pages |
22281-22292 |
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Keywords |
ancestral distribution ancestral niche Antarctica genome penguin |
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Abstract |
Penguins are the only extant family of flightless diving birds. They currently comprise at least 18 species, distributed from polar to tropical environments in the Southern Hemisphere. The history of their diversification and adaptation to these diverse environments remains controversial. We used 22 new genomes from 18 penguin species to reconstruct the order, timing, and location of their diversification, to track changes in their thermal niches through time, and to test for associated adaptation across the genome. Our results indicate that the penguin crown-group originated during the Miocene in New Zealand and Australia, not in Antarctica as previously thought, and that Aptenodytes is the sister group to all other extant penguin species. We show that lineage diversification in penguins was largely driven by changing climatic conditions and by the opening of the Drake Passage and associated intensification of the Antarctic Circumpolar Current (ACC). Penguin species have introgressed throughout much of their evolutionary history, following the direction of the ACC, which might have promoted dispersal and admixture. Changes in thermal niches were accompanied by adaptations in genes that govern thermoregulation and oxygen metabolism. Estimates of ancestral effective population sizes (Ne) confirm that penguins are sensitive to climate shifts, as represented by three different demographic trajectories in deeper time, the most common (in 11 of 18 penguin species) being an increased Ne between 40 and 70 kya, followed by a precipitous decline during the Last Glacial Maximum. The latter effect is most likely a consequence of the overall decline in marine productivity following the last glaciation. |
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137,354 |
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Bachelor's thesis |
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0027-8424, 1091-6490 |
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yes |
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Serial |
7780 |
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Title |
Cryptic speciation in gentoo penguins is driven by geographic isolation and regional marine conditions: Unforeseen vulnerabilities to global change |
Type |
Journal |
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Year |
2020 |
Publication |
Diversity and distributions |
Abbreviated Journal |
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Volume |
26 |
Issue |
8 |
Pages |
958-975 |
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Keywords |
diversification ecological niche overlap gentoo penguin subspecies |
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Abstract |
Aim The conservation of biodiversity is hampered by data deficiencies, with many new species and subspecies awaiting description or reclassification. Population genomics and ecological niche modelling offer complementary new tools for uncovering functional units of phylogenetic diversity. We hypothesize that phylogenetically delineated lineages of gentoo penguins (Pygoscelis papua) distributed across Antarctica and sub-Antarctic Islands are subject to spatially explicit ecological conditions that have limited gene flow, facilitating genetic differentiation, and thereby speciation processes. Location Antarctica and sub-Antarctic area. Methods We identify divergent lineages for gentoo penguins using ddRAD-seq and mtDNA, and generated species distribution models (SDMs) based on terrestrial and marine parameters. Results Analyses of our genomic data supports the existence of four major lineages of gentoo penguin: (i) spanning the sub-Antarctic archipelagos north of the Antarctic Polar Front (APF); (ii) Kerguelen Island; (iii) South America; and (iv) across maritime Antarctic and the Scotia Arc archipelagos. The APF, a major current system around Antarctica, acts as the most important barrier separating regional sister lineages. Our ecological analyses spanning both the terrestrial (breeding sites) and marine (feeding sites) realms recover limited niche overlap among the major lineages of gentoo penguin. We observe this pattern to correspond more closely with regional differentiation of marine conditions than to terrestrial macroenvironmental features. Main conclusions Recognition of regional genetic lineages as discrete evolutionary entities that occupy distinct ecological niches and also differ morphologically should be considered a priority for conservation. Gentoo penguins provide a good example of how conservation policy can be directly impacted by new insights obtained through the integration of larger genomic datasets with novel approaches to ecological modelling. This is particularly pertinent to polar environments that are among the most rapidly changing environments on earth. |
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137,354 |
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Bachelor's thesis |
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ISSN |
1472-4642 |
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yes |
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Call Number |
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Serial |
7950 |
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Journal |
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Year |
2020 |
Publication |
HardwareX |
Abbreviated Journal |
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Volume |
8 |
Issue |
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Pages |
e00134 |
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Keywords |
Automated camera system Collective behavior Ecology Image processing Remote sensing Wildlife monitoring |
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Abstract |
Camera traps for motion-triggered or continuous time-lapse recordings are readily available on the market. For demanding applications in ecology and environmental sciences, however, commercial systems often lack flexibility to freely adjust recording time intervals, suffer from mechanical component wear, and can be difficult to combine with auxiliary sensors such as GPS, weather stations, or light sensors. We present a robust time-lapse camera system that has been operating continuously since 2013 under the harsh climatic conditions of the Antarctic and Subantarctic regions. Thus far, we have recorded over one million images with individual cameras. The system consumes 122 mW of power in standby mode and captures up to 200,000 high-resolution (16 MPix) images without maintenance such as battery or image memory replacement. It offers time-lapse intervals between 2 s and 1 h, low-light or night-time power saving, and data logging capabilities for additional inputs such as GPS and weather data. |
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137 |
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ISBN |
2468-0672 |
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yes |
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Call Number |
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Serial |
8302 |
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Author |
Le Bohec C. |
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Thesis |
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Year |
2020 |
Publication |
Hdr |
Abbreviated Journal |
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Issue |
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Pages |
pp 90 |
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Abstract |
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Programme |
137 |
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yes |
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Serial |
8353 |
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Author |
Houstin A. |
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2020 |
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Phd |
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Pages |
pp 368 |
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137 |
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yes |
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Call Number |
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Serial |
8495 |
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Author |
Eveline Pinseel, Steven B. Janssens, Elie Verleyen, Pieter Vanormelingen, Tyler J. Kohler, Elisabeth M. Biersma, Koen Sabbe, Bart Van de Vijver, Wim Vyverman |
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Title |
Global radiation in a rare biosphere soil diatom |
Type |
Journal |
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Year |
2020 |
Publication |
Nature Communications |
Abbreviated Journal |
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Volume |
11 |
Issue |
1 |
Pages |
2382 |
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Keywords |
Biogeography Phylogenetics Speciation |
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Abstract |
Soil micro-organisms drive the global carbon and nutrient cycles that underlie essential ecosystem functions. Yet, we are only beginning to grasp the drivers of terrestrial microbial diversity and biogeography, which presents a substantial barrier to understanding community dynamics and ecosystem functioning. This is especially true for soil protists, which despite their functional significance have received comparatively less interest than their bacterial counterparts. Here, we investigate the diversification of Pinnularia borealis, a rare biosphere soil diatom species complex, using a global sampling of >800 strains. We document unprecedented high levels of species-diversity, reflecting a global radiation since the Eocene/Oligocene global cooling. Our analyses suggest diversification was largely driven by colonization of novel geographic areas and subsequent evolution in isolation. These results illuminate our understanding of how protist diversity, biogeographical patterns, and members of the rare biosphere are generated, and suggest allopatric speciation to be a powerful mechanism for diversification of micro-organisms. |
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136,1167 |
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Bachelor's thesis |
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ISSN |
2041-1723 |
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yes |
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Serial |
8269 |
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Author |
David Renault |
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Title |
A Review of the Phenotypic Traits Associated with Insect Dispersal Polymorphism, and Experimental Designs for Sorting out Resident and Disperser Phenotypes |
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Journal |
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Year |
2020 |
Publication |
Insects |
Abbreviated Journal |
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Volume |
11 |
Issue |
4 |
Pages |
214 |
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Keywords |
fecundity hostile matrix life-history mating morphology movement range expansion reproduction wing-dimorphic wing-monomorphic |
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Abstract |
Dispersal represents a key life-history trait with several implications for the fitness of organisms, population dynamics and resilience, local adaptation, meta-population dynamics, range shifting, and biological invasions. Plastic and evolutionary changes of dispersal traits have been intensively studied over the past decades in entomology, in particular in wing-dimorphic insects for which literature reviews are available. Importantly, dispersal polymorphism also exists in wing-monomorphic and wingless insects, and except for butterflies, fewer syntheses are available. In this perspective, by integrating the very latest research in the fast moving field of insect dispersal ecology, this review article provides an overview of our current knowledge of dispersal polymorphism in insects. In a first part, some of the most often used experimental methodologies for the separation of dispersers and residents in wing-monomorphic and wingless insects are presented. Then, the existing knowledge on the morphological and life-history trait differences between resident and disperser phenotypes is synthetized. In a last part, the effects of range expansion on dispersal traits and performance is examined, in particular for insects from range edges and invasion fronts. Finally, some research perspectives are proposed in the last part of the review. |
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136 |
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Bachelor's thesis |
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yes |
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Serial |
7656 |
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Journal |
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Year |
2020 |
Publication |
Annales de geographie |
Abbreviated Journal |
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Volume |
732 |
Issue |
2 |
Pages |
31-52 |
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136 |
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ISSN |
0003-4010 |
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yes |
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6947 |
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Author |
T. Ouisse, E. Day, L. Laville, F. Hendrickx, P. Convey, D. Renault |
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Title |
Effects of elevational range shift on the morphology and physiology of a carabid beetle invading the sub-Antarctic Kerguelen Islands |
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Journal |
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Year |
2020 |
Publication |
Scientific Reports |
Abbreviated Journal |
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Volume |
10 |
Issue |
1 |
Pages |
1234 |
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Abstract |
Climatic changes can induce geographic expansion and altitudinal shifts in the distribution of invasive species by offering more thermally suitable habitats. At the remote sub-Antarctic Kerguelen Islands, the predatory insect Merizodus soledadinus (Coleoptera: Carabidae), introduced in 1913, rapidly invaded coastal habitats. More recent colonisation of higher elevation habitats by this species could be underlain by their increased thermal suitability as the area has warmed. This study compared the effect of elevational range shift on the morphology and physiology of adult M. soledadinus sampled along two altitudinal transects (from the foreshore to 250?m a.s.l.) and a horizontal lowland transect orthogonal to the seashore (400?m length). Although high inter-individual and inter-transect variations in the traits examined were present, we observed that body mass of males and females tended to decrease with elevation, and that triglyceride contents decreased with distance from the shore. Moreover, protein contents of females as well as those of 26 metabolites were influenced significantly by distance to the foreshore. These results suggest that future climate change at the Kerguelen Islands will further assist the colonisation of lowland inland and higher altitude habitats by this aggressively invasive predator, by making previously sub-optimal habitats progressively more suitable. |
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136 |
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2045-2322 |
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yes |
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7662 |
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