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Martin Tournier, Pauline Goulet, Nadège Fonvieille, David Nerini, Mark Johnson, Christophe Guinet |
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Title |
A novel animal-borne miniature echosounder to observe the distribution and migration patterns of intermediate trophic levels in the Southern Ocean |
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Year |
2021 |
Publication |
Journal of Marine Systems |
Abbreviated Journal |
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Volume |
223 |
Issue |
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Pages |
103608 |
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Keywords |
Biologging Diel vertical migration Functional data analysis Marine acoustics Micronekton Sonar tag |
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Abstract |
Despite expanding in-situ observations of marine ecosystems by new-generation sensors, information about intermediate trophic levels remains sparse. Indeed, mid-trophic levels, while encompassing a broad range of zooplankton and micronekton organisms that represent a key component of marine ecosystems and sustain large and diverse communities of marine predators, are challenging to sample and identify. In this study, we examined whether an animal-borne miniature active echosounder can provide information on the distribution and movements of mid-trophic level organisms. If so, such a sonar tag, harnessing the persistent diving behaviour of far-ranging marine mammals, could greatly increase the density of data on this under-studied biome. High-frequency (1.5 MHz) sonar tags were deployed simultaneously with oceanographic tags on two southern elephant seals (Mirounga leonina), at the Kerguelen Islands and Valdés Peninsula (Argentina), and recorded acoustic backscatter while the seals foraged respectively in the Indian and the Atlantic sectors of the Southern Ocean. The backscatter varied widely over time and space, and the seals attempted to capture only a small fraction of the insonified targets. Diel vertical migration patterns were clearly identifiable in the data, reinforcing our confidence in the ability of the sonar tags to detect living mid-trophic organisms along with possibly sinking biological detritus. Moreover, CTD tags attached to the same animals indicated how the abundance, size distribution, and diel migration behaviour of acoustic targets varied with water bodies. These preliminary results demonstrate the potential for animal-borne sonars to provide detailed in-situ information. Further validation effort will make it a valuable tool to refine the estimation of carbon export fluxes as well as for assessing the variation of mid-trophic level biomass according to oceanographic domains and seasons. |
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0924-7963 |
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8260 |
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Martin Beal, Maria P. Dias, Richard A. Phillips, Steffen Oppel, Carolina Hazin, Elizabeth J. Pearmain, Josh Adams, David J. Anderson, Michelle Antolos, Javier A. Arata, José Manuel Arcos, John P. Y. Arnould, Jill Awkerman, Elizabeth Bell, Mike Bell, Mark Carey, Ryan Carle, Thomas A. Clay, Jaimie Cleeland, Valentina Colodro, Melinda Conners, Marta Cruz-Flores, Richard Cuthbert, Karine Delord, Lorna Deppe, Ben J. Dilley, Herculano Dinis, Graeme Elliott, Fernanda De Felipe, Jonathan Felis, Manuela G. Forero, Amanda Freeman, Akira Fukuda, Jacob González-Solís, José Pedro Granadeiro, April Hedd, Peter Hodum, José Manuel Igual, Audrey Jaeger, Todd J. Landers, Matthieu Le Corre, Azwianewi Makhado, Benjamin Metzger, Teresa Militão, William A. Montevecchi, Virginia Morera-Pujol, Leia Navarro-Herrero, Deon Nel, David Nicholls, Daniel Oro, Ridha Ouni, Kiyoaki Ozaki, Flavio Quintana, Raül Ramos, Tim Reid, José Manuel Reyes-González, Christopher Robertson, Graham Robertson, Mohamed Salah Romdhane, Peter G. Ryan, Paul Sagar, Fumio Sato, Stefan Schoombie, R. Paul Scofield, Scott A. Shaffer, Nirmal Jivan Shah, Kim L. Stevens, Christopher Surman, Robert M. Suryan, Akinori Takahashi, Vikash Tatayah, Graeme Taylor, David R. Thompson, Leigh Torres, Kath Walker, Ross Wanless, Susan M. Waugh, Henri Weimerskirch, Takashi Yamamoto, Zuzana Zajkova, Laura Zango, Paulo Catry |
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Title |
Global political responsibility for the conservation of albatrosses and large petrels |
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Year |
2021 |
Publication |
Science Advances |
Abbreviated Journal |
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Volume |
7 |
Issue |
10 |
Pages |
eabd7225 |
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Abstract |
Migratory marine species cross political borders and enter the high seas, where the lack of an effective global management framework for biodiversity leaves them vulnerable to threats. Here, we combine 10,108 tracks from 5775 individual birds at 87 sites with data on breeding population sizes to estimate the relative year-round importance of national jurisdictions and high seas areas for 39 species of albatrosses and large petrels. Populations from every country made extensive use of the high seas, indicating the stake each country has in the management of biodiversity in international waters. We quantified the links among national populations of these threatened seabirds and the regional fisheries management organizations (RFMOs) which regulate fishing in the high seas. This work makes explicit the relative responsibilities that each country and RFMO has for the management of shared biodiversity, providing invaluable information for the conservation and management of migratory species in the marine realm. |
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109 |
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yes |
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8369 |
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Author |
Mark A. Hindell, Clive R. McMahon, Ian Jonsen, Robert Harcourt, Fernando Arce, Christophe Guinet |
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Title |
Inter- and intrasex habitat partitioning in the highly dimorphic southern elephant seal |
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Year |
2021 |
Publication |
Ecology and Evolution |
Abbreviated Journal |
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Volume |
11 |
Issue |
4 |
Pages |
1620-1633 |
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Keywords |
Antarctic Shelf foraging and diving behavior Kerguelen Plateau mid-year haul out predation risk Southern Ocean |
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Abstract |
Partitioning resources is a key mechanism for avoiding intraspecific competition and maximizing individual energy gain. However, in sexually dimorphic species it is difficult to discern if partitioning is due to competition or the different resource needs of morphologically distinct individuals. In the highly dimorphic southern elephant seal, there are intersexual differences in habitat use; at Iles Kerguelen, males predominantly use shelf waters, while females use deeper oceanic waters. There are equally marked intrasexual differences, with some males using the nearby Kerguelen Plateau, and others using the much more distant Antarctic continental shelf ( 2,000 km away). We used this combination of inter and intrasexual behavior to test two hypotheses regarding habitat partitioning in highly dimorphic species. (a) that intersexual differences in habitat use will not appear until the seals diverge in body size and (b) that some habitats have higher rates of energy return than others. In particular, that the Antarctic shelf would provide higher energy returns than the Kerguelen Shelf, to offset the greater cost of travel. We quantified the habitat use of 187 southern elephant seals (102 adult females and 85 subadult males). The seals in the two groups were the same size ( 2.4 m) removing the confounding effect of body size. We found that the intersexual differences in habitat use existed before the divergence in body size. Also, we found that the amount of energy gained was the same in all of the major habitats. This suggests that the use of shelf habitats by males is innate, and a trade-off between the need to access the large benthic prey available on shelf waters, against the higher risk of predation there. Intrasexual differences in habitat use are another trade-off; although there are fewer predators on the Antarctic shelf, it is subject to considerable interannual fluctuations in sea-ice extent. In contrast, the Kerguelen Plateau presents more consistent foraging opportunities, but contains higher levels of predation. Habitat partitioning in this highly dimorphic species is therefore the result of complex interplay of life history strategies, environmental conditions and predation pressure. |
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109,1201 |
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Bachelor's thesis |
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2045-7758 |
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yes |
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Serial |
8243 |
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Author |
Marjorie Roscian, Anthony Herrel, Raphaël Cornette, Arnaud Delapré, Yves Cherel, Isabelle Rouget |
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Title |
Underwater photogrammetry for close-range 3D imaging of dry-sensitive objects: The case study of cephalopod beaks |
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Journal |
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Year |
2021 |
Publication |
Ecology and Evolution |
Abbreviated Journal |
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Volume |
11 |
Issue |
12 |
Pages |
7730-7742 |
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Keywords |
3D models cephalopod beaks dry-sensitive material micro-CT scanning micro-photogrammetry underwater photogrammetry |
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Abstract |
Technical advances in 3D imaging have contributed to quantifying and understanding biological variability and complexity. However, small, dry-sensitive objects are not easy to reconstruct using common and easily available techniques such as photogrammetry, surface scanning, or micro-CT scanning. Here, we use cephalopod beaks as an example as their size, thickness, transparency, and dry-sensitive nature make them particularly challenging. We developed a new, underwater, photogrammetry protocol in order to add these types of biological structures to the panel of photogrammetric possibilities. We used a camera with a macrophotography mode in a waterproof housing fixed in a tank with clear water. The beak was painted and fixed on a colored rotating support. Three angles of view, two acquisitions, and around 300 pictures per specimen were taken in order to reconstruct a full 3D model. These models were compared with others obtained with micro-CT scanning to verify their accuracy. The models can be obtained quickly and cheaply compared with micro-CT scanning and have sufficient precision for quantitative interspecific morphological analyses. Our work shows that underwater photogrammetry is a fast, noninvasive, efficient, and accurate way to reconstruct 3D models of dry-sensitive objects while conserving their shape. While the reconstruction of the shape is accurate, some internal parts cannot be reconstructed with photogrammetry as they are not visible. In contrast, these structures are visible using reconstructions based on micro-CT scanning. The mean difference between both methods is very small (10−5 to 10−4 mm) and is significantly lower than differences between meshes of different individuals. This photogrammetry protocol is portable, easy-to-use, fast, and reproducible. Micro-CT scanning, in contrast, is time-consuming, expensive, and nonportable. This protocol can be applied to reconstruct the 3D shape of many other dry-sensitive objects such as shells of shellfish, cartilage, plants, and other chitinous materials. |
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109 |
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2045-7758 |
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yes |
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Serial |
8092 |
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Author |
Marina Renedo, Zoyne Pedrero, David Amouroux, Yves Cherel, Paco Bustamante |
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Title |
Mercury isotopes of key tissues document mercury metabolic processes in seabirds |
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Year |
2021 |
Publication |
Chemosphere |
Abbreviated Journal |
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Volume |
263 |
Issue |
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Pages |
127777 |
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Keywords |
Demethylation Detoxification Metabolism Methylmercury Moult |
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Abstract |
Seabirds accumulate significant amounts of mercury (Hg) due to their long-life span together with their medium to high trophic position in marine food webs. Hg speciation and Hg isotopic analyses of total Hg in different tissues (pectoral muscles, liver, brain, kidneys, blood and feathers) were assessed to investigate their detoxification mechanisms. Three species with contrasted ecological characteristics were studied: the Antarctic prion (zooplankton feeder), the white-chinned petrel (pelagic generalist consumer) and the southern giant petrel (scavenger on seabirds and marine mammals). The difference of mass-dependent fractionation (MDF, δ202Hg) values between liver and muscles (up to 0.94 ‰) in all three seabirds strongly suggests hepatic demethylation of the isotopically lighter methylmercury (MeHg) and subsequent redistribution of the isotopically heavier fraction of MeHg towards the muscles. Similarly, higher δ202Hg values in feathers (up to 1.88 ‰) relative to muscles and higher proportion of MeHg in feathers (94–97%) than muscles (30–70%) likely indicate potential MeHg demethylation in muscle and preferential excretion of MeHg (isotopically heavier) in the growing feathers during moult. The extents of these key detoxification processes were strongly dependent on the species-specific detoxification strategies and levels of dietary MeHg exposure. We also found higher mass-independent fractionation (MIF, Δ199Hg) values in feathers relative to internal tissues, possibly due to different integration times of Hg exposure between permanently active organs and inert tissues as feathers. Hg isotope variations reported in this study show evidence of detoxification processes in seabirds and propose a powerful approach for deep investigation of the Hg metabolic processes in seabirds. |
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109 |
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0045-6535 |
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yes |
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8084 |
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Marina Renedo, David Amouroux, Céline Albert, Sylvain Bérail, Vegard S. Bråthen, Maria Gavrilo, David Grémillet, Hálfdán H. Helgason, Dariusz Jakubas, Anders Mosbech, Hallvard Strøm, Emmanuel Tessier, Katarzyna Wojczulanis-Jakubas, Paco Bustamante, Jérôme Fort |
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Title |
Contrasting Spatial and Seasonal Trends of Methylmercury Exposure Pathways of Arctic Seabirds: Combination of Large-Scale Tracking and Stable Isotopic Approaches |
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Year |
2021 |
Publication |
Environmental Science & Technology |
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Volume |
54 |
Issue |
21 |
Pages |
13619-13629 |
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Abstract |
Despite the limited direct anthropogenic mercury (Hg) inputs in the circumpolar Arctic, elevated concentrations of methylmercury (MeHg) are accumulated in Arctic marine biota. However, the MeHg production and bioaccumulation pathways in these ecosystems have not been completely unraveled. We measured Hg concentrations and stable isotope ratios of Hg, carbon, and nitrogen in the feathers and blood of geolocator-tracked little auk Alle alle from five Arctic breeding colonies. The wide-range spatial mobility and tissue-specific Hg integration times of this planktivorous seabird allowed the exploration of their spatial (wintering quarters/breeding grounds) and seasonal (nonbreeding/breeding periods) MeHg exposures. An east-to-west increase of head feather Hg concentrations (1.74–3.48 μg·g–1) was accompanied by significant spatial trends of Hg isotope (particularly Δ199Hg: 0.96–1.13‰) and carbon isotope (δ13C: −20.6 to −19.4‰) ratios. These trends suggest a distinct mixing/proportion of MeHg sources between western North Atlantic and eastern Arctic regions. Higher Δ199Hg values (+0.4‰) in northern colonies indicate an accumulation of more photochemically impacted MeHg, supporting shallow MeHg production and bioaccumulation in high Arctic waters. The combination of seabird tissue isotopic analysis and spatial tracking helps in tracing the MeHg sources at various spatio-temporal scales. |
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388 |
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0013-936X |
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yes |
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8023 |
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María José Frugone, Theresa L. Cole, María Eugenia López, Gemma Clucas, Pável Matos-Maraví, Nicolás A. Lois, Pierre Pistorius, Francesco Bonadonna, Phil Trathan, Andrea Polanowski, Barbara Wienecke, Andrea Raya-Rey, Klemens Pütz, Antje Steinfurth, Ke Bi, Cynthia Y. Wang-Claypool, Jonathan M. Waters, Rauri C. K. Bowie, Elie Poulin, Juliana A. Vianna |
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Title |
Taxonomy based on limited genomic markers may underestimate species diversity of rockhopper penguins and threaten their conservation |
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Year |
2021 |
Publication |
Diversity and Distributions |
Abbreviated Journal |
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Volume |
27 |
Issue |
11 |
Pages |
2277-2296 |
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Keywords |
Eudyptes genomics rockhopper penguins species delimitation |
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Abstract |
Aim Delimiting recently diverged species is challenging. During speciation, genetic differentiation may be distributed unevenly across the genome, as different genomic regions can be subject to different selective pressures and evolutionary histories. Reliance on limited numbers of genetic markers that may be underpowered can make species delimitation even more challenging, potentially resulting in taxonomic inconsistencies. Rockhopper penguins of the genus Eudyptes comprise three broadly recognized taxa: northern (E. moseleyi), southern (E. chrysocome) and eastern rockhopper (E. filholi). Their taxonomic status has been controversial for decades, with researchers disagreeing about whether E. chrysocome and E. filholi are distinct species or conspecific. Our goal is to evaluate genome-wide patterns of divergence to evaluate genetic differentiation and species delimitation in rockhopper penguins, and to assess which mechanisms may underlie previous discordance among nuclear versus mitochondrial analyses. Location Sub-Antarctic and temperate coastal regions of the Southern Hemisphere. Methods We generated reduced-representation genomic libraries using double digest restriction-site associated DNA (ddRAD) sequencing to evaluate genetic differentiation, contemporary migration rates and admixture among colonies of rockhopper penguins. Results The extent of genetic differentiation among the three taxa was consistently higher than population-level genetic differentiation found within these and other penguin species. There was no evidence of admixture among the three taxa, suggesting the absence of ongoing gene flow among them. Species delimitation analyses based on molecular data, along with other lines of evidence, provide strong support for the taxonomic distinction of three species of rockhopper penguins. Main conclusions Our results provide strong support for the existence of three distinct species of rockhopper penguins. The recognition of this taxonomic diversity is crucial for the management and conservation of this widely distributed species group. This study illustrates that widespread dispersive seabird lineages lacking obvious morphological differences may nevertheless have complex evolutionary histories and comprise cryptic species diversity. |
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354 |
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1472-4642 |
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8421 |
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Maria Federica Marcucci, Igino Coco, Stefano Massetti, Alessio Pignalberi, Victoriya Forsythe, Michael Pezzopane, Alexander Koustov, Simona Longo, David Biondi, Enrico Simeoli, Giuseppe Consolini, Monica Laurenza, Aurélie Marchaudon, Andrea Satta, Alessandro Cirioni, Angelo De Simone, Angelo Olivieri, Alessandro Baù, Alberto Salvati |
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Title |
Echo occurrence in the southern polar ionosphere for the SuperDARN Dome C East and Dome C North radars |
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Year |
2021 |
Publication |
Polar Science |
Abbreviated Journal |
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Volume |
28 |
Issue |
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Pages |
100684 |
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Keywords |
Echo occurrence IRI model Polar cap radars Ray-tracing |
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Abstract |
In this paper, echo occurrence rates for the Dome C East (DCE) and the new Dome C North (DCN) radars are studied. We report the ionospheric and ground scatter echo occurrence rates for selected periods around equinoxes and solstices in the final part of the solar cycle XXIV. The occurrence maps built in Altitude Adjusted Corrected Geomagnetic latitude and Magnetic Local Time coordinates show peculiar patterns highly variable with season. The comparisons of the radar observations with the International Reference Ionosphere model electron density and with ray tracing simulations allow us to explain the major features of observed patterns in terms of electron density variations. The study shows the great potential of the DCE and DCN radar combination to the Super Dual Auroral Radar Network (SuperDARN) convection mapping in terms of monitoring key regions of the high-latitude ionosphere critical for understanding of the magnetospheric dynamics. |
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1873-9652 |
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yes |
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8020 |
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Author |
Margot Arnould-Pétré, Charlène Guillaumot, Bruno Danis, Jean-Pierre Féral, Thomas Saucède |
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Title |
Individual-based model of population dynamics in a sea urchin of the Kerguelen Plateau (Southern Ocean), Abatus cordatus, under changing environmental conditions |
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Year |
2021 |
Publication |
Ecological Modelling |
Abbreviated Journal |
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Volume |
440 |
Issue |
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Pages |
109352 |
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Keywords |
Climate change Dynamic energy budget Ecological modelling Endemic echinoderm Individual-based model Kerguelen Model sensitivity |
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Abstract |
The Kerguelen Islands are part of the French Southern Territories, located at the limit of the Indian and Southern oceans. They are highly impacted by climate change, and coastal marine areas are particularly at risk. Assessing the responses of species and populations to environmental change is challenging in such areas for which ecological modelling can constitute a helpful approach. In the present work, a DEB-IBM model (Dynamic Energy Budget – Individual-Based Model) was generated to simulate and predict population dynamics in an endemic and common benthic species of shallow marine habitats of the Kerguelen Islands, the sea urchin Abatus cordatus. The model relies on a dynamic energy budget model (DEB) developed at the individual level. Upscaled to an individual-based population model (IBM), it then enables to model population dynamics through time as a result of individual physiological responses to environmental variations. The model was successfully built for a reference site to simulate the response of populations to variations in food resources and temperature. Then, it was implemented to model population dynamics at other sites and for the different IPCC climate change scenarios RCP 2.6 and 8.5. Under present-day conditions, models predict a more determinant effect of food resources on population densities, and on juvenile densities in particular, relative to temperature. In contrast, simulations predict a sharp decline in population densities under conditions of IPCC scenarios RCP 2.6 and RCP 8.5 with a determinant effect of water warming leading to the extinction of most vulnerable populations after a 30-year simulation time due to high mortality levels associated with peaks of high temperatures. Such a dynamic model is here applied for the first time to a Southern Ocean benthic and brooding species and offers interesting prospects for Antarctic and sub-Antarctic biodiversity research. It could constitute a useful tool to support conservation studies in these remote regions where access and bio-monitoring represent challenging issues. |
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1044 |
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0304-3800 |
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8002 |
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Manuele Bazzichetto, François Massol, Marta Carboni, Jonathan Lenoir, Jonas J. Lembrechts, Rémi Joly, David Renault |
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Once upon a time in the far south: Influence of local drivers and functional traits on plant invasion in the harsh sub-Antarctic islands |
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2021 |
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Journal of Vegetation Science |
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32 |
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4 |
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e13057 |
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alien plants anthropogenic propagule pressure cold environments human disturbances plant invasiveness species distribution models topoclimate |
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Aim Here, we aim to: (a) investigate the local effect of environmental and anthropogenic factors on alien plant invasion in sub-Antarctic islands; and (b) explore whether and how functional traits affect alien species dependence on anthropogenic factors in these environments. Location Possession Island, Crozet archipelago (French sub-Antarctic islands). Methods Single-species distribution models were used to explore the effect of high-resolution topoclimatic and human-related variables on the occurrence of six alien plants colonizing French sub-Antarctic islands. Furthermore, plant responses to human-related variables and the effect of those variables in interaction with plant traits were analysed by means of a multi-species distribution model. This allowed identifying functional features mediating the influence of human activities on the occurrence probability of alien plant species. Results We observed two main invasion patterns: (a) species predicted to occur close to the introduction sites, whose occurrence probability appeared to be strongly affected by anthropogenic factors; and (b) species predicted to occur nearly everywhere on Possession Island, except in areas featuring particularly harsh climatic conditions. Differences in the influence of human-related variables on the occurrence of the alien species were mostly related to their life history, plant height and residence time, with perennial and low-statured species introduced earlier appearing less dependent on human-induced dispersal and disturbance. Conclusions We conclude that both topoclimatic and anthropogenic factors affect plant invasion on sub-Antarctic islands. Specifically, species predicted to occur close to their introduction sites appear much more dependent on human presence and activity, potentially due to the lack of key functional traits allowing them to spread successfully across Possession Island under the harsh sub-Antarctic climate. Yet, particularly severe abiotic conditions are a major constraint which equally limits the occurrence of all alien plants, irrespective of their dependence on anthropogenic factors. |
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1654-1103 |
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8298 |
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